View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_low_42 (Length: 227)
Name: NF18707_low_42
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36080394 - 36080178
Alignment:
| Q |
1 |
catatataaataaaacacaaacatatgaatattttgagagttaatttttagaaaattaaggtgtctccagaatttagactatctcttccaacaaatgcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36080394 |
catatataaataaaacacaaacatatgaatattttgagagttaatttttagaaaattaaggtgtctccagaatttagaccatctcttccaacaaatgcat |
36080295 |
T |
|
| Q |
101 |
gttttccactacactaaaataacatactagcaattctatagaactagcaatcatatgttagc--tttcttgtttctctagaaaatcttgtcgaatggaat |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36080294 |
gttttcgactacactaaaataacatactagcaattctatagaactagcaatcatatattagctttttcttgtttctctagaaaatcttgtcgaatggaat |
36080195 |
T |
|
| Q |
199 |
ccttgaacacgccatgg |
215 |
Q |
| |
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||||||||||||||||| |
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| T |
36080194 |
ccttgaacacgccatgg |
36080178 |
T |
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