View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18707_low_6 (Length: 425)

Name: NF18707_low_6
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18707_low_6
NF18707_low_6
[»] chr3 (5 HSPs)
chr3 (226-373)||(7565094-7565241)
chr3 (24-156)||(22980019-22980151)
chr3 (23-109)||(7565288-7565374)
chr3 (22-68)||(33752336-33752382)
chr3 (25-67)||(35652226-35652268)
[»] chr2 (1 HSPs)
chr2 (17-156)||(36780794-36780933)
[»] chr7 (1 HSPs)
chr7 (19-156)||(32303770-32303907)
[»] chr1 (2 HSPs)
chr1 (21-176)||(38048289-38048445)
chr1 (25-67)||(34083180-34083222)
[»] chr6 (4 HSPs)
chr6 (19-174)||(9956050-9956205)
chr6 (25-76)||(33347665-33347716)
chr6 (25-76)||(35117797-35117848)
chr6 (26-67)||(2296414-2296455)
[»] chr4 (3 HSPs)
chr4 (20-67)||(30937967-30938014)
chr4 (25-67)||(50464548-50464590)
chr4 (22-67)||(8347947-8347992)
[»] chr5 (1 HSPs)
chr5 (17-67)||(31659052-31659102)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 226 - 373
Target Start/End: Complemental strand, 7565241 - 7565094
Alignment:
Q  226 tgaacccaactctccccggctcaaagccaccgtcaccaccgattcctggtcggaaaccgccgtcgccattttccggcacctgtccgatttcagaaactcc 325  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  7565241 tgaacccaactctccctggctcaaagccgccgtcgccaccgattcctggtcggaaaccgccgtcgccattttccgattcctgtccgatttcagaaactcc 7565142  T
Q  326 ttcaaaatcgaaccctttctctgtttccaatcctgctttgtaaatttt 373  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||    
T  7565141 atcaaaatcgaaccctttctctgtttccaatcctgctttgttaatttt 7565094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 22980019 - 22980151
Alignment:
Q  24 acatatcacatgagaatgagttttgtacgtgagaatgatgagaacaactataggcctttggatattaaatagatggctgagattaaaatgattcatacaa 123  Q
    ||||||||||||||||||| |||| || ||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  22980019 acatatcacatgagaatgacttttatatgtgagaatggtgagaacaattataggcccttggatattaaatagatggttgagattaaaatgactcatacaa 22980118  T
Q  124 caacacatgtttcttttcttactctattatttc 156  Q
    ||||| |||||||| |||||| |||||||||||    
T  22980119 caacatatgtttctcttcttattctattatttc 22980151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 7565374 - 7565288
Alignment:
Q  23 gacatatcacatgagaatgagttttgtacgtgagaatgatgagaacaactataggcctttggatattaaatagatggctgagattaa 109  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7565374 gacatatcacatgagaatgatttttgtatgtgagaatgatgagaacaactatagacctttggatattaaatagatggctgatattaa 7565288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 33752382 - 33752336
Alignment:
Q  22 ggacatatcacatgagaatgagttttgtacgtgagaatgatgagaac 68  Q
    ||||||||||||||||||||||| |  || |||||||||||||||||    
T  33752382 ggacatatcacatgagaatgagtatcttatgtgagaatgatgagaac 33752336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 35652268 - 35652226
Alignment:
Q  25 catatcacatgagaatgagttttgtacgtgagaatgatgagaa 67  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||    
T  35652268 catatcacatgagaatgacttttgtatgtgagaatggtgagaa 35652226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 36780933 - 36780794
Alignment:
Q  17 atagaggacatatcacatgagaatgagttttgtacgtgagaatgatgagaacaactataggcctttggatattaaatagatggctgagattaaaatgatt 116  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |    
T  36780933 atagaggacatatcacatgagaatgacttttgtatgtgagaatggtgagaacaattataggcccttggatattaaatagatggttgagattaaaatgact 36780834  T
Q  117 catacaacaacacatgtttcttttcttactctattatttc 156  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  36780833 catacaacaacacatgtttctcttcttattctattatttc 36780794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 32303907 - 32303770
Alignment:
Q  19 agaggacatatcacatgagaatgagttttgtacgtgagaatgatgagaacaactataggcctttggatattaaatagatggctgagattaaaatgattca 118  Q
    |||||||||||||||||||||||| ||||||| ||||||||| |||||| || || ||||| ||||||||||||||||||| ||||||||||| || |||    
T  32303907 agaggacatatcacatgagaatgacttttgtatgtgagaatggtgagaataattacaggcccttggatattaaatagatggttgagattaaaaggactca 32303808  T
Q  119 tacaacaacacatgtttcttttcttactctattatttc 156  Q
    ||||||||||||||||||| |||||| |||| ||||||    
T  32303807 tacaacaacacatgtttctcttcttattctaatatttc 32303770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 38048445 - 38048289
Alignment:
Q  21 aggacatatcacatgagaatgagttttgtacgtgagaatgatgagaacaactataggcctttggatattaaatagatggctgagattaaaatgattcata 120  Q
    |||||||||||||||||||||  || |||| ||||||||| ||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  38048445 aggacatatcacatgagaatggtttatgtatgtgagaatggtgagaacaattataggcccttggatattaaatagatggttgagattaaaatgactcata 38048346  T
Q  121 caacaacacatgtttcttttcttactctatta-tttcacttaatcccaacatcacgt 176  Q
     | ||||| |||| ||| |||||||||||||| |||  | |||||||||||||||||    
T  38048345 aagcaacaaatgtatctcttcttactctattattttttcctaatcccaacatcacgt 38048289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 34083222 - 34083180
Alignment:
Q  25 catatcacatgagaatgagttttgtacgtgagaatgatgagaa 67  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||    
T  34083222 catatcacatgagaatgacttttgtaggtgagaatgataagaa 34083180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 9956050 - 9956205
Alignment:
Q  19 agaggacatatcacatgagaatgagttttgtacgtgagaatgatgagaacaactataggcctttggatattaaatagatggctgagattaaaatgattca 118  Q
    |||||| ||||| ||||||||||| ||||||| |||||||||||||||| || ||||  || || |||||  |||||||||||||||||||||  | |||    
T  9956050 agaggatatatcccatgagaatgacttttgtatgtgagaatgatgagaataattataaacccttcgatatataatagatggctgagattaaaacaactca 9956149  T
Q  119 tacaacaacacatgtttcttttcttactctattatttcacttaatcccaacatcac 174  Q
    |||||||||||||||||||   |||||||||||||||| | |||||||||||||||    
T  9956150 tacaacaacacatgtttctccccttactctattatttctcataatcccaacatcac 9956205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 33347716 - 33347665
Alignment:
Q  25 catatcacatgagaatgagttttgtacgtgagaatgatgagaacaactatag 76  Q
    |||||||||||||||||||| |  || ||||||||||||||||||| |||||    
T  33347716 catatcacatgagaatgagtatcttatgtgagaatgatgagaacaattatag 33347665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 35117797 - 35117848
Alignment:
Q  25 catatcacatgagaatgagttttgtacgtgagaatgatgagaacaactatag 76  Q
    |||||||||||||||||||| |  || ||||||||||||||||||| |||||    
T  35117797 catatcacatgagaatgagtatcttatgtgagaatgatgagaacaattatag 35117848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 2296414 - 2296455
Alignment:
Q  26 atatcacatgagaatgagttttgtacgtgagaatgatgagaa 67  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  2296414 atatcacatgagaatgggttttgtatgtgagaatggtgagaa 2296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 30937967 - 30938014
Alignment:
Q  20 gaggacatatcacatgagaatgagttttgtacgtgagaatgatgagaa 67  Q
    ||||||||||||||||||||||| || | || ||||||||||||||||    
T  30937967 gaggacatatcacatgagaatgacttctatatgtgagaatgatgagaa 30938014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 50464548 - 50464590
Alignment:
Q  25 catatcacatgagaatgagttttgtacgtgagaatgatgagaa 67  Q
    |||||||||||||||||  ||||||||||||||||| ||||||    
T  50464548 catatcacatgagaatggcttttgtacgtgagaatggtgagaa 50464590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 8347947 - 8347992
Alignment:
Q  22 ggacatatcacatgagaatgagttttgtacgtgagaatgatgagaa 67  Q
    ||||||||||||||||||||  ||||||| ||||||||| ||||||    
T  8347947 ggacatatcacatgagaatggcttttgtatgtgagaatggtgagaa 8347992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 31659102 - 31659052
Alignment:
Q  17 atagaggacatatcacatgagaatgagttttgtacgtgagaatgatgagaa 67  Q
    |||| |||||||||||||||||||||  |||||| ||||||||| ||||||    
T  31659102 ataggggacatatcacatgagaatgacatttgtatgtgagaatggtgagaa 31659052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University