View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18707_low_9 (Length: 383)
Name: NF18707_low_9
Description: NF18707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18707_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 32824251 - 32823895
Alignment:
| Q |
18 |
aacctttattctccaaacactcctaatcatctacatgatcttattctcgttgaaagagaaggatatgcgtttttatttaatttagagtctgaaatattgc |
117 |
Q |
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| T |
32824251 |
aacctttattctccaaacactcctaatcatctacatgatcttattctcgttgaaagagaaggatatgcgtttttatttaatttagagtctgaaatattgc |
32824152 |
T |
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| Q |
118 |
catatttttgtacgcattgccaaaatataggtcattaagttgaaaatgttgaaaattgaaatctcaaaggtataaaccttcatgttaattggagacactc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32824151 |
catatttttgtacgcattgccaaaatataggtcattaagttgaaaatgttgaaaattgaaatctcaaaggtataaaccttcatgttaatgggagacactc |
32824052 |
T |
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| Q |
218 |
tttctttacctatcacaaagtacacggtttgttatctttaagttcaactaaaatttctttaaagtctcccgacttagagtcatcttcttctaaaacttca |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32824051 |
tttctttacctatcacaaagtacacggtttgttat-tttaagttcaacaaatttttttttaaagtctcccgactcagagtcatcttcttctaaaacttca |
32823953 |
T |
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| Q |
318 |
aaggaaacgaagttatcctttcttccttagagaattttggcactattttattcttctc |
375 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32823952 |
aaggaaacaaagttatcctttcttccttggagaattttggcactattttattcttctc |
32823895 |
T |
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