View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18708_high_1 (Length: 678)
Name: NF18708_high_1
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18708_high_1 |
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| [»] scaffold0221 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 667
Target Start/End: Original strand, 15218079 - 15218719
Alignment:
| Q |
18 |
attctcacggtcttctttaaacaaatattcacttagcctattgtagcacatgcgtccggattgttttaatctatacaatgatctttgtaacttaattgca |
117 |
Q |
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| T |
15218079 |
attctcatagtcttctttaaacaaatattcacttagcctattgtaccacatgcgtctggattgttttaacctatacaatgatctttgtaacttaactgca |
15218178 |
T |
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| Q |
118 |
tacatttttctaagttttgatgtctcaagcctctttagtcctttaggtattttcatgtgtatgttattatcaagtgatccatataaataagcagtaacaa |
217 |
Q |
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| T |
15218179 |
tgcatttttctaggttttgatgtcttaggcctctttagtcctttcagtattttcatgtatatgttattatcaagtgatccatataaataagcagtaacaa |
15218278 |
T |
|
| Q |
218 |
catccataagatacatatcaagattgttaaaaaccaacaaaccagttaattaacaaaaagtaatggtattcataacaggagaatatgttacatcataatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
15218279 |
catccataagatacatatcaagattgttaaaaacctacaaaccaattaattaacaaaaagtaattgtatccataacaggaaaatatgttacatcataatc |
15218378 |
T |
|
| Q |
318 |
aattcctggtctttggaagnnnnnnnnnnnctacgtgcaacaagacaagcattgtatcttacaatttcatttttctcatttcattttcttacaaaaaccc |
417 |
Q |
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| T |
15218379 |
aattcct-gtctttggaa--------aaaactatgtgcaacaagacgagccttgtatcttacaatttcatttttctcatttcattttcttacaaaaactc |
15218469 |
T |
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| Q |
418 |
acttataccaagaggtttcacaccttcagtcnnnnnnnnnnnnnnnngacaaacatgccttcatgaataaccataataggcccaaatacttttcgatttt |
517 |
Q |
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| T |
15218470 |
acttataccaagaggtttcacaccttcagtc-tttttttatttttttgacaaacacgccttcatgaataaccacaataggcccaaatacttttcgatttt |
15218568 |
T |
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| Q |
518 |
taagagaatttaattcggtatttattgcatctttctaatttttccaatcatgtctattttaacattcgttagtagttatgagtttgggatcatca-tttc |
616 |
Q |
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| T |
15218569 |
taagagaatttaattcggtatatattgcatctttctaatttttccaatcatgtctattttatcattcgttagtagttatgggtttgggatcatcattttc |
15218668 |
T |
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| Q |
617 |
attcgtaatttcatatgcaatggagaatgaaaatatctcatcaatattcat |
667 |
Q |
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| T |
15218669 |
attcgtaatttcacatccaatggagaatgaaaatatctcatcaatattcat |
15218719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 34112519 - 34112558
Alignment:
| Q |
185 |
tatcaagtgatccatataaataagcagtaacaacatccat |
224 |
Q |
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| T |
34112519 |
tatcaagtgatccatataaataagttgtaacaacatccat |
34112558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 34112716 - 34112773
Alignment:
| Q |
390 |
ttctcatttcattttcttacaaaaacccacttata-ccaagaggtttcacaccttcag |
446 |
Q |
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| T |
34112716 |
ttctcatttccttttctcacgaaaacccacctatatccaacaggtttcacaccttcag |
34112773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 424
Target Start/End: Complemental strand, 16711 - 16325
Alignment:
| Q |
29 |
cttctttaaacaaatattcacttagcctattgtagcacatgcgtccggattgttttaatctatacaatgatctttgtaacttaattgcatacatttttct |
128 |
Q |
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| T |
16711 |
cttctttaagcaaatattcacttagcttattgtaccacatgcgcccggattgttttaactcatataatgatctttgcaacttaattgcatacatttatct |
16612 |
T |
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| Q |
129 |
aagttttgatgtctcaagcctctttagtcctttaggtattttcatgtgtatgttattatcaagtgatccatataaataagcagtaacaacatccataaga |
228 |
Q |
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| T |
16611 |
aggttt-gatgtatcaagcatcttaagtccttccggtattttcatgtatatgtcattatcaagtgatccatataaataagcagtaacaacatccataaga |
16513 |
T |
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| Q |
229 |
tacatatcaagattgttaaaaaccaacaaaccagttaattaacaaaaagtaatggtattcataacaggagaatatgttacatcataatcaattcctggtc |
328 |
Q |
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| T |
16512 |
tacatatcaagattattaaatactgacaaaccaattaaataacaaaaagtaatggtatccatagcaggagaatatgttacctcataatcacttcttggtc |
16413 |
T |
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| Q |
329 |
-tttggaagnnnnnnnnnnnctacgtgcaacaagacaagcattgtatcttacaatttcatttttctcatttcattttcttacaaaaacccacttata |
424 |
Q |
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| T |
16412 |
gttcggaa---------aaaccttgtgcaacaagacgagccttgtatcttacaatttcatttttctcatttcgttttcttacaaaaactcacttata |
16325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 16308 - 16198
Alignment:
| Q |
475 |
ccttcatgaataaccataataggcccaaatactttt-cgatttttaagagaatttaattcggtatttattgcatctttctaatttttccaatcatgtcta |
573 |
Q |
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| T |
16308 |
ccttcaggtataaccacaataaacccaaatactttttcgattcttaagagaattcacttcagtatatattgcatctttccaagttttccaatcatgtcta |
16209 |
T |
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| Q |
574 |
ttttaacattc |
584 |
Q |
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|||| |||||| |
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| T |
16208 |
ttttgacattc |
16198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 664
Target Start/End: Complemental strand, 16187 - 16144
Alignment:
| Q |
621 |
gtaatttcatatgcaatggagaatgaaaatatctcatcaatatt |
664 |
Q |
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| T |
16187 |
gtaacttcacatgcaatggagaatgaaaatatttcatcaatatt |
16144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 14720726 - 14720782
Alignment:
| Q |
168 |
tttcatgtgtatgttattatcaagtgatccatataaataagcagtaacaacatccat |
224 |
Q |
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| T |
14720726 |
tttcatgtaaatgtcactatcaagtgatccatataaataagctgtaacaacatccat |
14720782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 17603465 - 17603409
Alignment:
| Q |
168 |
tttcatgtgtatgttattatcaagtgatccatataaataagcagtaacaacatccat |
224 |
Q |
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| T |
17603465 |
tttcatgtaaatgtcactatcaagtgatccatataaataagctgtaacaacatccat |
17603409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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