View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18708_high_8 (Length: 261)
Name: NF18708_high_8
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18708_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 6685528 - 6685301
Alignment:
| Q |
16 |
acagattatgcaaccccacgtattctcatcaccaccatccattctgatttctcttacacactcttcaattccactctttttctgcttctcattctcaatc |
115 |
Q |
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| T |
6685528 |
acagattatgcaaccccacgtattctcatcaccaccatccattctgatttctcttacacactcttcaattccactctttttctgcttctcattctcaatc |
6685429 |
T |
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| Q |
116 |
caactcaaccattattgatttatttcctttcaatcacaaacacaatcctttgcatccactacttcttcagaatcagagtcaaaaaatgtccctctgttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6685428 |
caactcaaccattattgatttatttcctttcaatcataaacacaatcctttgcatccactacttcttcagaatcagagtcaaaaaatgtcgctctgttat |
6685329 |
T |
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| Q |
216 |
tcttcttccactttcatcacacacccct |
243 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6685328 |
tcttcttccactttcatcacacacccct |
6685301 |
T |
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