View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18708_low_11 (Length: 287)

Name: NF18708_low_11
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18708_low_11
NF18708_low_11
[»] chr8 (5 HSPs)
chr8 (1-273)||(4304957-4305226)
chr8 (25-73)||(11089578-11089626)
chr8 (26-71)||(37873128-37873173)
chr8 (26-91)||(20473782-20473847)
chr8 (26-71)||(20852922-20852967)
[»] chr4 (2 HSPs)
chr4 (26-99)||(54165156-54165229)
chr4 (26-99)||(45548779-45548852)
[»] scaffold0154 (1 HSPs)
scaffold0154 (26-101)||(4318-4393)
[»] chr3 (3 HSPs)
chr3 (26-101)||(28300289-28300364)
chr3 (26-71)||(47849675-47849720)
chr3 (26-71)||(53133975-53134020)
[»] chr1 (4 HSPs)
chr1 (26-94)||(49699752-49699820)
chr1 (26-67)||(43755705-43755746)
chr1 (26-94)||(31427957-31428025)
chr1 (25-101)||(47113276-47113352)
[»] scaffold0172 (1 HSPs)
scaffold0172 (26-101)||(16978-17053)
[»] chr5 (1 HSPs)
chr5 (26-69)||(35233479-35233522)
[»] chr7 (1 HSPs)
chr7 (25-101)||(47644707-47644783)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 4305226 - 4304957
Alignment:
Q  1 taaaatgtggcattttatcgaaagtaaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgttattatt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  4305226 taaaatgtggcattttatcgaaaataaatgatatttgtaaaaccattttacgataatttattgacaactttttatatcatatccacattatattattatt 4305127  T
Q  101 cnnnnnnncttttctttcctctctattgtttttgacccataagnnnnnnnnnnnnnnnttgtcataatagttgttacaaatggttgtagaaagatatcac 200  Q
    |       ||||||||| ||||||||||||||| | ||||||                |||||||||||||| |||||||| |||||| ||| |||||||    
T  4305126 ctttttttcttttcttttctctctattgttttttatccataa---aaaaaaataaaaattgtcataatagttattacaaatagttgtacaaaaatatcac 4305030  T
Q  201 aactctttaccataaacacattagtgtattttgatagatttggacatatatatagttgatatcctaccatgag 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4305029 aactctttaccataaacacattagtgtattttgatagatttggacatatatatagttgatatcctaccatgag 4304957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 11089578 - 11089626
Alignment:
Q  25 taaatgatatttgtaaaaccattttacgataatttattgacaacttttt 73  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  11089578 taaatgatatttgtacaaccattttactataattttttgacaacttttt 11089626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 37873173 - 37873128
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaacttt 71  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||    
T  37873173 aaatgatatttgtaaaaccattttatgataactttttgacaacttt 37873128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 20473782 - 20473847
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattat 91  Q
    |||||||||||||| ||||||||||  | ||||| ||||||||||| | ||| |||| ||||||||    
T  20473782 aaatgatatttgtacaaccattttataacaattttttgacaactttctctatcatactcacattat 20473847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 20852922 - 20852967
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaacttt 71  Q
    |||||||||||||| |||||||||| |||||||| | |||||||||    
T  20852922 aaatgatatttgtacaaccattttatgataatttttagacaacttt 20852967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 54165229 - 54165156
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgttattat 99  Q
    |||||||||||||| ||||||||||| | ||||| ||||||||||||| | | |||| ||||| ||||||||||    
T  54165229 aaatgatatttgtacaaccattttactacaattttttgacaactttttctctcatactcacatgatgttattat 54165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 45548852 - 45548779
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgttattat 99  Q
    |||||||||||||| |||||||||  |||||||| ||||||||||||| | | |||| ||||| |||| |||||    
T  45548852 aaatgatatttgtacaaccattttgtgataattttttgacaactttttctttcatactcacatgatgtcattat 45548779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 4318 - 4393
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgttattattc 101  Q
    |||||||||||||| |||||||||| ||||| || ||||||||||| ||| | |||| |||||||| || ||||||    
T  4318 aaatgatatttgtacaaccattttatgataactttttgacaactttctatctcatactcacattatattcttattc 4393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 28300289 - 28300364
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgttattattc 101  Q
    |||||||||||||| ||||||||||  ||||||| ||||||||||||| | |||||| || ||||| || ||||||    
T  28300289 aaatgatatttgtacaaccattttattataattttttgacaactttttcttttatactcaaattatattcttattc 28300364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 47849675 - 47849720
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaacttt 71  Q
    |||||||||||||| |||||||||  |||||||| |||||||||||    
T  47849675 aaatgatatttgtacaaccattttgtgataattttttgacaacttt 47849720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 53134020 - 53133975
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaacttt 71  Q
    |||||||||||||||||||||||||  ||||||| || ||||||||    
T  53134020 aaatgatatttgtaaaaccattttataataattttttaacaacttt 53133975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 49699820 - 49699752
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgtt 94  Q
    |||||||||||||| |||||||||| |||||||| || |||||||| | | |||||| ||||| |||||    
T  49699820 aaatgatatttgtacaaccattttatgataattttttaacaactttctttcttatactcacatgatgtt 49699752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 43755746 - 43755705
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaa 67  Q
    |||||||||||||| |||||||||| |||||||| |||||||    
T  43755746 aaatgatatttgtacaaccattttatgataattttttgacaa 43755705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 31428025 - 31427957
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgtt 94  Q
    |||||||||||||| ||||| |||  || ||||| ||||||||||| | ||| |||| |||||||||||    
T  31428025 aaatgatatttgtacaaccactttgtgacaatttcttgacaactttctctatcatactcacattatgtt 31427957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 47113276 - 47113352
Alignment:
Q  25 taaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgttattattc 101  Q
    ||||||||||||||| || |||||| | ||||||| | ||||||||| | | | |||| ||||||||||| ||||||    
T  47113276 taaatgatatttgtacaatcattttgcaataatttttggacaactttctctctcatactcacattatgtttttattc 47113352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 16978 - 17053
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgttattattc 101  Q
    |||||||||||||| ||||||||||| | || || ||||||||||| | | | |||| ||||| ||||||||||||    
T  16978 aaatgatatttgtacaaccattttactacaactttttgacaactttctctctcatactcacatgatgttattattc 17053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 35233522 - 35233479
Alignment:
Q  26 aaatgatatttgtaaaaccattttacgataatttattgacaact 69  Q
    |||||||||||| | ||||||||||||||||||| |||||||||    
T  35233522 aaatgatatttgcacaaccattttacgataatttcttgacaact 35233479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 47644707 - 47644783
Alignment:
Q  25 taaatgatatttgtaaaaccattttacgataatttattgacaactttttatattatacccacattatgttattattc 101  Q
    ||||||||||||||| ||||| ||||  ||||||| ||||||||||| | | | |||| |||||||| || ||||||    
T  47644707 taaatgatatttgtacaaccactttattataattttttgacaactttctctctcatactcacattatatttttattc 47644783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University