View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18708_low_13 (Length: 221)
Name: NF18708_low_13
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18708_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 43224077 - 43224261
Alignment:
| Q |
19 |
atgtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43224077 |
atgtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactg |
43224176 |
T |
|
| Q |
119 |
gatgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggatt |
203 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224177 |
gatgtttatattgaacacctaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggatt |
43224261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 41654815 - 41654637
Alignment:
| Q |
25 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
124 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41654815 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41654716 |
T |
|
| Q |
125 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggatt |
203 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41654715 |
tatatgtaacacccaattcatccaattttgttcttataagcttactggtctcaaattcttcataaccaagttcaggatt |
41654637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 43227882 - 43228062
Alignment:
| Q |
23 |
agacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
43227882 |
agacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatg |
43227981 |
T |
|
| Q |
123 |
tttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggatt |
203 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| | ||||| ||||||||||| |
|
|
| T |
43227982 |
tttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggatt |
43228062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 43213348 - 43213526
Alignment:
| Q |
25 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
124 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
43213348 |
acctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtt |
43213447 |
T |
|
| Q |
125 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggatt |
203 |
Q |
| |
|
||||| | |||| ||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
43213448 |
tatatgggacacctaattcatctaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggatt |
43213526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 43206370 - 43206552
Alignment:
| Q |
21 |
gtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactgga |
120 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
43206370 |
gtagacctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactgga |
43206469 |
T |
|
| Q |
121 |
tgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggatt |
203 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| | ||||| ||||||||||| |
|
|
| T |
43206470 |
tgtttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggatt |
43206552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 41650275 - 41650097
Alignment:
| Q |
25 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
124 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41650275 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41650176 |
T |
|
| Q |
125 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggatt |
203 |
Q |
| |
|
||||| | |||| |||||||||||||| ||||| |||||||||||| || | |||||| | ||||| ||||||||||| |
|
|
| T |
41650175 |
tatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattcttgataactcagttcaggatt |
41650097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 5073627 - 5073782
Alignment:
| Q |
36 |
aagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtttatattgaaca |
135 |
Q |
| |
|
|||||||||||| |||||||| | ||| |||||||||| | |||||||||||| || |||| ||||| || | ||||||||||| |||||| ||| | |
|
|
| T |
5073627 |
aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttatagggaata |
5073726 |
T |
|
| Q |
136 |
cttaattcatccaattctgttcttataagcttactggtctcaaattcctcataacc |
191 |
Q |
| |
|
|| | || |||||||||||||||||| | | ||| |||||||||||||||||||| |
|
|
| T |
5073727 |
ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacc |
5073782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
| Q |
39 |
agcatccatgtcagctctaagagcgacaaaaggag |
73 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
31839458 |
agcatccatgtcagctctaagagcaacaaaaggag |
31839492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
| Q |
39 |
agcatccatgtcagctctaagagcgacaaaaggaggaa |
76 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26262888 |
agcatccatgtcagctctaagagcaacaaatggaggaa |
26262851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University