View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18708_low_14 (Length: 208)

Name: NF18708_low_14
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18708_low_14
NF18708_low_14
[»] chr8 (3 HSPs)
chr8 (1-208)||(4305241-4305448)
chr8 (33-127)||(7671717-7671810)
chr8 (6-57)||(43623594-43623646)
[»] chr6 (3 HSPs)
chr6 (1-128)||(31238316-31238444)
chr6 (1-128)||(31247686-31247814)
chr6 (88-128)||(2660395-2660435)
[»] chr1 (2 HSPs)
chr1 (8-124)||(48982834-48982951)
chr1 (4-75)||(14321068-14321140)
[»] chr2 (2 HSPs)
chr2 (88-128)||(31775968-31776008)
chr2 (1-76)||(37985142-37985218)
[»] chr5 (1 HSPs)
chr5 (88-128)||(32565914-32565954)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 4305448 - 4305241
Alignment:
Q  1 cactagttaaagagattaatatagaa-ttttacattagaaaatgatgaaaagtaaaatgttatattttatgaaagtcnnnnnnntgtcgtttttaataga 99  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |||||||||||        ||||||||| |||| |    
T  4305448 cactaattaaagagattaatataaaaattttacattagaaaatgatgaaaagtaaaatgttctactttatgaaagtaaaaaaaatgtcgtttt-aataaa 4305350  T
Q  100 aaaattctatttttaactttcttaactagagtgaaccgagggcactggttaacatgatccaattctgatctattatagtcatttttaggttgtgaacatt 199  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||| ||| |||||| ||||| |||||||||||||||||    
T  4305349 aaaattctatttttaactttcttaactagagtgactcgagggcactgattaacatgacccaattccgatatattattgtcatatttaggttgtgaacatt 4305250  T
Q  200 aatgactat 208  Q
    |||||||||    
T  4305249 aatgactat 4305241  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 7671717 - 7671810
Alignment:
Q  33 attagaaaatgatgaaaagtaaaatgttatattttatgaaagtcnnnnnnntgtcgtttttaatagaaaaattctatttttaactttcttaacta 127  Q
    |||| ||||| |||||||||||||||||  ||||||  ||||||       ||| |||||||||| ||| ||| |||||||||||||||||||||    
T  7671717 attaaaaaataatgaaaagtaaaatgttccattttaaaaaagtcaaaaagttgttgtttttaataaaaatatt-tatttttaactttcttaacta 7671810  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 43623646 - 43623594
Alignment:
Q  6 gttaaagagattaatatagaat-tttacattagaaaatgatgaaaagtaaaat 57  Q
    |||||| ||||||||||| ||  ||||||||| ||||||||||||||||||||    
T  43623646 gttaaaaagattaatataaaaactttacattaaaaaatgatgaaaagtaaaat 43623594  T

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Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31238316 - 31238444
Alignment:
Q  1 cactagttaaagagattaatatagaa-ttttacattagaaaatgatgaaaagtaaaatgttatattttatgaaagtcnnnnnnntgtcgtttttaataga 99  Q
    |||| ||||| |||| |||||||||| |||| |||| |||||||||||||||| |||||||  | ||||| ||||||       ||| ||||||||| ||    
T  31238316 cacttgttaacgagactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgttgtttttaatgga 31238415  T
Q  100 aaaattctatttttaactttcttaactag 128  Q
    |||||||||||||||||||||||||||||    
T  31238416 aaaattctatttttaactttcttaactag 31238444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31247686 - 31247814
Alignment:
Q  1 cactagttaaagagattaatatagaa-ttttacattagaaaatgatgaaaagtaaaatgttatattttatgaaagtcnnnnnnntgtcgtttttaataga 99  Q
    |||| ||||| |||| |||||||||| |||| |||| |||||||||||||||| |||||||  | ||||| ||||||       ||| ||||||||| ||    
T  31247686 cacttgttaacgagactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgttgtttttaatgga 31247785  T
Q  100 aaaattctatttttaactttcttaactag 128  Q
    ||| ||||||||| |||||||||||||||    
T  31247786 aaatttctattttaaactttcttaactag 31247814  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 2660395 - 2660435
Alignment:
Q  88 gtttttaatagaaaaattctatttttaactttcttaactag 128  Q
    |||||||||||||||  ||||||||||||||| ||||||||    
T  2660395 gtttttaatagaaaatatctatttttaacttttttaactag 2660435  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 48982951 - 48982834
Alignment:
Q  8 taaagagattaatatagaa-ttttacattagaaaatgatgaaaagtaaaatgttatattttatgaaagtcnnnnnnntgtcgtttttaatagaaaaattc 106  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||  ||||||   |||||| |||||        | | ||||||||||||||| |||    
T  48982951 taaagagattaatatagaaattttacattaaaaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgtttttaatagaaaatttc 48982852  T
Q  107 tatttttaactttcttaa 124  Q
    ||||||||||||||||||    
T  48982851 tatttttaactttcttaa 48982834  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 14321140 - 14321068
Alignment:
Q  4 tagttaaagagattaatatagaattt-tacattagaaaatgatgaaaagtaaaatgttatattttatgaaagt 75  Q
    |||||||  |||||||||||||| || | ||||  ||| |||||||||||||||||||  |||||||||||||    
T  14321140 tagttaagaagattaatatagaaattatgcattgaaaattgatgaaaagtaaaatgtttaattttatgaaagt 14321068  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 31776008 - 31775968
Alignment:
Q  88 gtttttaatagaaaaattctatttttaactttcttaactag 128  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  31776008 gttttcaataaaaaaattctatttttaactttcttaactag 31775968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37985142 - 37985218
Alignment:
Q  1 cactagttaaagagattaatatagaattt-tacattagaaaatgatgaaaagtaaaatgttatattttatgaaagtc 76  Q
    ||||||||||  |||||||||||||| || ||||||  ||| || |||||||| |||||||| | ||||||||||||    
T  37985142 cactagttaataagattaatatagaaattatacattgaaaattggtgaaaagtgaaatgttaaactttatgaaagtc 37985218  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 32565954 - 32565914
Alignment:
Q  88 gtttttaatagaaaaattctatttttaactttcttaactag 128  Q
    ||||||||| ||||  |||||||||||||||||||||||||    
T  32565954 gtttttaatggaaattttctatttttaactttcttaactag 32565914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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