View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18708_low_3 (Length: 461)
Name: NF18708_low_3
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18708_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 147 - 321
Target Start/End: Complemental strand, 23434110 - 23433936
Alignment:
| Q |
147 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccacaaacataataatagttatcttacaaaataac |
246 |
Q |
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| T |
23434110 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccgcaaacataataatagttatcttacaaaataac |
23434011 |
T |
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| Q |
247 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactagttgaatctcattatgttcttct |
321 |
Q |
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| T |
23434010 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactggttgaatctcattatgttcttct |
23433936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 23433869 - 23433808
Alignment:
| Q |
389 |
cacaagcttaatctcattctattcttcggggtttttggggttagttttgtttgcttaatatt |
450 |
Q |
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| T |
23433869 |
cacaagcttaatctcattctattcttcggggtttctggggttagttttgtttgcttaatatt |
23433808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 23434243 - 23434180
Alignment:
| Q |
18 |
cactctatcccttaatcttcatctccctcaatgacattttctccacacattcacgttccagttt |
81 |
Q |
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| T |
23434243 |
cactctatcccttaatcttcatctccctcaatggcattttctccacacattcacgttcctgttt |
23434180 |
T |
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