View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18708_low_5 (Length: 407)
Name: NF18708_low_5
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18708_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 7179025 - 7179414
Alignment:
| Q |
1 |
attaagtgtttggagaacaaactaacctgagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagagtctaccataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7179025 |
attaagtgtttggagaacaaactaacctgagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagagtctaccataaa |
7179124 |
T |
|
| Q |
101 |
aagtgcccggtacagcagaaacaaaacaattagaaccattgtgattatcatgattattgtatcccatgtcttgccttagttttttgtgaaaagatggcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7179125 |
aagtgcccggtacagcagaaacaaaacaattagaaccattgtgattatcatgattattgtatcccatgtcttgccttagttttttgtgaaaagatggcaa |
7179224 |
T |
|
| Q |
201 |
agaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatataacattagctcccttggtgctggtcgattcaacatgcttgaggttgcattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||||||||||||| ||||| |
|
|
| T |
7179225 |
agaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatacaacattagttcctttggtgctgtttgattcatcatgcttgaggtttcattt |
7179324 |
T |
|
| Q |
301 |
atagcttcaactatttctgaaattactcttagggcattaggtcctgatgaacaacctaaatcagcaattcccatcttcattattggccat |
390 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7179325 |
atagcttcaactatttctgaaattacacttaaggcattaggtccggatgagcaacctaagtcagcaattcccatcttcattattggccat |
7179414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 24 - 390
Target Start/End: Original strand, 7192217 - 7192583
Alignment:
| Q |
24 |
aacctgagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagagtctaccataaaaagtgcccggtacagcagaaaca |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7192217 |
aaccttagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagagtctaccataaaaagtgcccggtacagcagaaaca |
7192316 |
T |
|
| Q |
124 |
aaacaattagaaccattgtgattatcatgattattgtatcccatgtcttgccttagttttttgtgaaaagatggcaaagaagcaaaaatgttgttgaagt |
223 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| | |||| | | ||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7192317 |
aaacaattagaaccattgtgatcatgatgattattatttcccttttgttggcttaattttttgtggaaagatggcaaagaagcaaaaatgttgttgaagt |
7192416 |
T |
|
| Q |
224 |
cattggtgaaaaggtcattcatatataacattagctcccttggtgctggtcgattcaacatgcttgaggttgcatttatagcttcaactatttctgaaat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7192417 |
cattggtgaaaaggtcattcatatataacattagctcctttggtgctggtcgattcaacatgcttgaggttgcatttatagcttcaactatttctgaaat |
7192516 |
T |
|
| Q |
324 |
tactcttagggcattaggtcctgatgaacaacctaaatcagcaattcccatcttcattattggccat |
390 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7192517 |
tacccttagggcattaggtcctgatgaacaacctaaatcagcaattcccatcttcattattggccat |
7192583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University