View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18708_low_6 (Length: 369)
Name: NF18708_low_6
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18708_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 351
Target Start/End: Original strand, 7179472 - 7179808
Alignment:
| Q |
14 |
aatattatcttcctctgcaaatttcatttacacaaattaaaacatacattgccaattaatgtttttaatttacatctcaattcgaaatgtttttaattta |
113 |
Q |
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| T |
7179472 |
aatattatcttcctctgcaaatttcatttacacaaattaaaacatacattgccaattaatgtttttaatttacatctcaattcgaaatgttttcaattta |
7179571 |
T |
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| Q |
114 |
cgtgtcattgacacatgttannnnnnnnnaattgtattgtaaaatgttacaaacaatttttggtctttatcatttgattcttaggaattaagagccatga |
213 |
Q |
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| T |
7179572 |
cgtgtcattgacacatgttattttattt-aattgtattgtaaaatgttacaaacaatttttggtctttatcatttgattcttaggaattaagagccatga |
7179670 |
T |
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| Q |
214 |
taatctagagtttggagaataattacttttgttagaatttgaactcgtgttttctctaaagatttgtctaagtttattaaaccacttgaaccctactaca |
313 |
Q |
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| T |
7179671 |
taatctagagtttggagaataactacttttgttagaatttgaactcgtgttttctctgaagatttgtctaagtttattaaaccagttgaaccctactacg |
7179770 |
T |
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| Q |
314 |
tacctactataannnnnnngaatcttaagcaaatacgt |
351 |
Q |
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| T |
7179771 |
tacctactataaattttttgaatcttaagcaaatacgt |
7179808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 7192969 - 7193046
Alignment:
| Q |
235 |
attacttttgttagaatttgaactcgtgttttctctaaagatttgtctaagtttattaaaccacttgaaccctactac |
312 |
Q |
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| T |
7192969 |
attactttagttagtatttgaactttaattttttctaaagattcgtctaagcttattaaaccacttgaaccctactac |
7193046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 7192642 - 7192685
Alignment:
| Q |
15 |
atattatcttcctctgcaaatttcatttacacaaattaaaacat |
58 |
Q |
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| T |
7192642 |
atattatcttcctctacatattttatttacacaaattaaaacat |
7192685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 10658644 - 10658684
Alignment:
| Q |
66 |
caattaatgtttttaatttacatctcaattcgaaatgtttt |
106 |
Q |
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| T |
10658644 |
caattaatgtttttaatttacgtgtcaattcgaaatgtttt |
10658684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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