View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18708_low_9 (Length: 312)
Name: NF18708_low_9
Description: NF18708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18708_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 6240406 - 6240115
Alignment:
| Q |
1 |
tgcaaacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaactcagattcacaagttgagac |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6240406 |
tgcatacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaaatcagattcacaagttgagac |
6240307 |
T |
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| Q |
101 |
cacaggttgtttctttgtacaccatgatattggagcattcataaacttaaacaagtacccataagtgannnnnnnngtcttgcttatctccataccaatt |
200 |
Q |
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| T |
6240306 |
cacaggttgtttctttgtacaccatgatattggagcattcataaacttaaacaagtacccataagtgattttttttgtcttgcttatctccataccaatt |
6240207 |
T |
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| Q |
201 |
tgcagttgaataagcaattaggttcatagtagctgatgctagtaaaatagtttcctatttctcatgcatatttagtgcaagtataaactgtc |
292 |
Q |
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| T |
6240206 |
tgcggttgaataagcaattaggttcatagtagctgatgctagtaaaatagtttcctatttctcatgcatatttagtggaagtataaactgtc |
6240115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6211471 - 6211432
Alignment:
| Q |
1 |
tgcaaacttctatcttcatttctttcaacccataatccaa |
40 |
Q |
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| T |
6211471 |
tgcaaacttctatcttcatttctttcaacccataatccaa |
6211432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 17507471 - 17507633
Alignment:
| Q |
1 |
tgcaaacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaactcagattcacaagttgaga- |
99 |
Q |
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| T |
17507471 |
tgcaaacttctatcttcagttccttcaacacggaatccagcaatattgcttgacatgctgctaaacaacctgctatatattctgattctcatgttgagaa |
17507570 |
T |
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| Q |
100 |
-----ccacaggttgtttctttgtacaccatgatattggagcattcataaacttaaacaagta |
157 |
Q |
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||| | ||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
17507571 |
ggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagta |
17507633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 23428090 - 23428179
Alignment:
| Q |
1 |
tgcaaacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaactcagattcac |
90 |
Q |
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| T |
23428090 |
tgcaaacttctatcttcagttctcttaacacataatccaaccatattgtttgacatgcagctaagcaacctactttatactcatattcac |
23428179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 15490081 - 15490147
Alignment:
| Q |
101 |
cacaggttgtttctttgtacaccatgatattggagcattcataaacttaaacaagtacccataagtg |
167 |
Q |
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| T |
15490081 |
cacagattgtttccttgtacaccatgatattagaacattcagaatcttatacaagtacccttaagtg |
15490147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 24650708 - 24650672
Alignment:
| Q |
12 |
atcttcatttctttcaacccataatccaaccatattg |
48 |
Q |
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| T |
24650708 |
atcttcatttctttcaacacataatccaaccgtattg |
24650672 |
T |
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