View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_high_10 (Length: 366)
Name: NF18709_high_10
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 52472188 - 52471833
Alignment:
| Q |
11 |
cataggcaacaatcgacgggtgagactgcctccttctataccttgctgaatggtgttactaagaaggatggggttttaaattggctaacaaaagaagggt |
110 |
Q |
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| T |
52472188 |
cataggcaacaatcgacggatgagactgcctccttctataccttgctgaatggtgttactaagaaggatggggttttaaattggctaacaaaagaagggt |
52472089 |
T |
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| Q |
111 |
gagtttctgtctaaacagcagcaagcagacatgacagttactatacggtgttaaaagagatcacaaaacacgtctcactgtaccaccacactcagcctat |
210 |
Q |
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| T |
52472088 |
gagtttctgtctaaacagcagcaagcagacatgacagttactatacggtgttaaaagagatcacaaaacacgtctcactgtaccaccacactcagcctat |
52471989 |
T |
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| Q |
211 |
attctctcccaatgttgggcttccaagggcctcaatccaacacttggaccatatcctgaaccttcatttctaacacagatccttggctgtcaacgttgtt |
310 |
Q |
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| T |
52471988 |
attctctcccaatgttgggcttccaagggcctcaatccaacacttggaccattgtgttctccttcatttctaacacagatccttggctttcaacattgtt |
52471889 |
T |
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| Q |
311 |
taatttatgggataccaaaaggtaaccattagaagactcttttgcatttacggtcc |
366 |
Q |
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| T |
52471888 |
taatttatgggataccaaaaggtaacctttagaagactcttttgcatttacggtcc |
52471833 |
T |
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Back To:
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 38793987 - 38794036
Alignment:
| Q |
300 |
tcaacgttgtttaatttatgggataccaaaaggtaaccattagaagactc |
349 |
Q |
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| T |
38793987 |
tcaacattgattgatttatgcgataccaaaaggtaaccattagaggactc |
38794036 |
T |
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