View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18709_high_12 (Length: 357)

Name: NF18709_high_12
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18709_high_12
NF18709_high_12
[»] chr1 (3 HSPs)
chr1 (21-342)||(39210045-39210349)
chr1 (206-338)||(24036791-24036927)
chr1 (15-90)||(7673903-7673978)
[»] chr8 (3 HSPs)
chr8 (21-180)||(27510640-27510799)
chr8 (206-342)||(27513624-27513760)
chr8 (247-339)||(8675153-8675245)
[»] chr3 (1 HSPs)
chr3 (235-331)||(9461193-9461298)
[»] chr2 (2 HSPs)
chr2 (216-328)||(38950770-38950885)
chr2 (49-90)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (280-332)||(18331979-18332031)
chr6 (211-278)||(18331878-18331945)
[»] chr4 (2 HSPs)
chr4 (39-177)||(42091774-42091912)
chr4 (38-154)||(31949210-31949326)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 39210349 - 39210045
Alignment:
Q  21 atattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgataaaattctttaaaaaatgtccaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||    
T  39210349 atattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaattctttaaaaa-tgtccaac 39210251  T
Q  121 cgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataatatatattctaca 220  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  39210250 cgtcagtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataatatatattctaca 39210151  T
Q  221 ctcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagttt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||                |||||| ||||||||||||||||||||||||||||||||||    
T  39210150 ctcacaacattggaatctaatctattcatattcaaattagttc----------------aaaaaaatcaacctcttcatcatcaggcttgcagatagttt 39210067  T
Q  321 catcaacttcccttgtattttc 342  Q
    ||||||||||||||||||||||    
T  39210066 catcaacttcccttgtattttc 39210045  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 338
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  206 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 304  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  305 ----ggcttgcagatagtttcatcaacttcccttgtat 338  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 7673903 - 7673978
Alignment:
Q  15 ccaagaatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 90  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||| |||||| |  |||| |||||||||||||||||    
T  7673903 ccaagcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa 7673978  T

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Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 27510640 - 27510799
Alignment:
Q  21 atattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgat-aaaattctttaaaaaatgtccaa 119  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||    
T  27510640 atattcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattctttaaaa-atgtccaa 27510738  T
Q  120 ccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510739 ccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 27510799  T

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Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 206 - 342
Target Start/End: Original strand, 27513624 - 27513760
Alignment:
Q  206 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 305  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  306 gcttgcagatagtttcatcaacttcccttgtattttc 342  Q
    |||||||| ||||||||||||||||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttc 27513760  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 8675245 - 8675153
Alignment:
Q  247 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtatt 339  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtatt 8675153  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 9461298 - 9461193
Alignment:
Q  235 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 325  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  326 acttcc 331  Q
    ||||||    
T  9461198 acttcc 9461193  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  216 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 309  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  310 gcagatagtttcatcaact 328  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
Q  49 gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 90  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  27592805 gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa 27592764  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  280 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 332  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  211 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 278  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 177
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
Q  39 agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact 137  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||  | |  ||||||||| |||| | | |||||| ||   |||||| |||    
T  42091774 agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact 42091872  T
Q  138 ttctcgttcctctttttgacagccacctcaaactcattct 177  Q
    ||| ||||||||||||  ||||| ||||||| ||||||||    
T  42091873 ttcccgttcctcttttccacagctacctcaatctcattct 42091912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 31949326 - 31949210
Alignment:
Q  38 cagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattctttaaaaaatgtccaaccgtcggtaaaatagac 136  Q
    ||||||||| ||||||||||||||||| |  |||||||||| |||| ||||||  | | ||||  ||||| |||||||||||||| || |||||||| ||    
T  31949326 cagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatcccattaaagctcttt-aaaaatgtccaaccatcagtaaaataaac 31949228  T
Q  137 tttctcgttcctcttttt 154  Q
      || ||||| |||||||    
T  31949227 cctcccgttcttcttttt 31949210  T

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