View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_high_21 (Length: 250)
Name: NF18709_high_21
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 5942635 - 5942530
Alignment:
| Q |
133 |
caaagcatgtatgacctatccctaatttatcttttatcacttcaaattattatttagaagaaacctttcatttacgaacaattgctagagtggagtgatg |
232 |
Q |
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| T |
5942635 |
caaagcatgtatgacctatccctaatttatcttttatcacttcaaattattatttagaagaaacctttcatttacggaaaattgctagagtggagtgatg |
5942536 |
T |
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| Q |
233 |
taattg |
238 |
Q |
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|||||| |
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| T |
5942535 |
taattg |
5942530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 5942890 - 5942767
Alignment:
| Q |
11 |
cataggagggaaacttcaataagttcatttgtaa-----aagaaaatattatacaccttttgcttgtgtccctctaagtgtctgtttggatgggcggctg |
105 |
Q |
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|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5942890 |
cataggagggaaacttcaataagttcatttgtaatttgaaaaagaatattatacaccttttgcttgtgtcccactaagtgtctgtttggatgggcggctg |
5942791 |
T |
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| Q |
106 |
taaatcacgttttgcttaaaatta |
129 |
Q |
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| T |
5942790 |
caaatcacgttttgcttaaaatta |
5942767 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 31363167 - 31363221
Alignment:
| Q |
82 |
agtgtctgtttggatgggcggctgtaaatcacgttttgcttaaaattacggcaaa |
136 |
Q |
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| T |
31363167 |
agtgtctgattggatgggcggctgtaaattacgttttgcttaaaattacggcaaa |
31363221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 8778914 - 8778968
Alignment:
| Q |
82 |
agtgtctgtttggatgggcggctgtaaatcacgttttgcttaaaattacggcaaa |
136 |
Q |
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| T |
8778914 |
agtgtatgtttggatgggcggttgcaaatcacgttttgcttaaaatcatggcaaa |
8778968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 16930274 - 16930216
Alignment:
| Q |
78 |
tctaagtgtctgtttggatgggcggctgtaaatcacgttttgcttaaaattacggcaaa |
136 |
Q |
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| T |
16930274 |
tctaagtgcctgtttggatgggcggctgcaagtcacgttttgctagaaatcacggcaaa |
16930216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 43684525 - 43684573
Alignment:
| Q |
81 |
aagtgtctgtttggatgggcggctgtaaatcacgttttgcttaaaatta |
129 |
Q |
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| T |
43684525 |
aagtgtctctttggatgggcgactgcaaatcaagttttgcttaaaatta |
43684573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 28739582 - 28739626
Alignment:
| Q |
88 |
tgtttggatgggcggctgtaaatcacgttttgcttaaaattacgg |
132 |
Q |
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| T |
28739582 |
tgtttgaatgggcggctgcaaatcacgttttgcttgaaatcacgg |
28739626 |
T |
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