View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_high_22 (Length: 249)
Name: NF18709_high_22
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_high_22 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 8974016 - 8974251
Alignment:
| Q |
14 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
113 |
Q |
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| T |
8974016 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
8974115 |
T |
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| Q |
114 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
213 |
Q |
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| T |
8974116 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactctttttgatcaagtttctaatttgcttacagtaatagttgtag |
8974215 |
T |
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| Q |
214 |
gagctgttattatatcaaacacttcacaaaataatc |
249 |
Q |
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| T |
8974216 |
gagctgttattatatcaaacacttcacaaaataatc |
8974251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 8962620 - 8962841
Alignment:
| Q |
14 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
113 |
Q |
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| T |
8962620 |
acttggtaatggagtctcactcaccggcttctcttcctatataggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaatttt |
8962719 |
T |
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| Q |
114 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
213 |
Q |
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| T |
8962720 |
acagaactaatcagagtgaagagcgagattgtggtttgtgaagacaagaatgaaagtctttctaatcaaatttataatgtggttaaagcagaagttgtag |
8962819 |
T |
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| Q |
214 |
gagctgttattatatcaaacac |
235 |
Q |
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| T |
8962820 |
gagctatttttatatcaaacac |
8962841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 8946470 - 8946351
Alignment:
| Q |
14 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
113 |
Q |
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|||||||||||||||||||||| | || | ||| |||||||||||| ||||||||||| ||| | |||||||||||||||||| ||| |||||| || |
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| T |
8946470 |
acttggtaatggagtctcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgggtttgtgcgacaatgtt |
8946371 |
T |
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| Q |
114 |
acacaactaatcaaagtgaa |
133 |
Q |
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| T |
8946370 |
acagaattaatcaaagtgaa |
8946351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 21687618 - 21687400
Alignment:
| Q |
14 |
acttggtaatggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatatt |
113 |
Q |
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|||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| || |
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| T |
21687618 |
acttggtaatggagtctcactcactggtttgtctttctatctaggaaacttctctgctaacaattttccaattgtttttatgggtatgtgtgacaatgtt |
21687519 |
T |
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| Q |
114 |
acacaactaatcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtag |
213 |
Q |
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| T |
21687518 |
aaagaattaaacacagtgaagagaaagattgtggtttgtgaaggcaataatgaaactcttcatgaacaaatgtttaatgtgtataaagcaaaagttgttg |
21687419 |
T |
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| Q |
214 |
gagctgttattatatcaaa |
232 |
Q |
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||| |||| |||||||||| |
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| T |
21687418 |
gaggtgtttttatatcaaa |
21687400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 34963123 - 34963079
Alignment:
| Q |
126 |
aaagtgaaaagtaagattgttgtctgtgaagacaagaatggaact |
170 |
Q |
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| T |
34963123 |
aaagtgaaaagcaagattatagtgtgtgaagacaagaatggaact |
34963079 |
T |
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