View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18709_high_23 (Length: 245)
Name: NF18709_high_23
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_high_23 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 37158780 - 37159006
Alignment:
| Q |
19 |
attctttgacttaaccttgccttcttgcaagtatttttccatatctttagcaaaatctccaaaacgatgccaatatgattctagcataaaaccctccatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37158780 |
attctttgacttaaccttgccttcttgcaagtatttttccatatctttagcaaaatctccaaaacgatgccagtatgattctagcataaaaccctccatc |
37158879 |
T |
|
| Q |
119 |
cttacctgctttcccaccatattcagaagattcctaacaccttctctttcggtccaaacctataacaacattataacaatttactaattagaaaaccgaa |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37158880 |
ctcacctgctttcccaccatattcagaagattcctaacaccttctctttcggtccaaacctataacaacattataacaatttactaattagaaaaccaaa |
37158979 |
T |
|
| Q |
219 |
gtttttgtgcatttaataaattatgta |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37158980 |
gtttttgtgcatttaataaattatgta |
37159006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 37152588 - 37152764
Alignment:
| Q |
19 |
attctttgacttaaccttgccttcttgcaagtatttttccatatctttagcaaaatctccaaaacgatgccaatatgattctagcataaaaccctccatc |
118 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
37152588 |
attctttgacttaatcttgccttcttgtaagtatatttccatatctttggcaaaatctccaaaacgatcccaatatgaatctagcataaaaccctccatc |
37152687 |
T |
|
| Q |
119 |
cttacctgctttcccaccatattcagaagattcctaacaccttctctttcggtccaaacctataacaacattataac |
195 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
37152688 |
cttacttcctttcccaccatattcagaagattcctaatgccttctctttctgtccaaacctataccaacattataac |
37152764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 37146556 - 37146767
Alignment:
| Q |
21 |
tctttgacttaaccttgccttcttgcaagtatttttccatatctttagcaaaatctccaaaacgatgccaatatgattctagcataaaaccctccatcct |
120 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||| ||||||||||| |
|
|
| T |
37146556 |
tctttggcttaattttgccttcttgtaagtatttttccatatctttaacaaaatctccaaaacgatgcaaatatgatttaatcataaagccctccatcct |
37146655 |
T |
|
| Q |
121 |
tacctgctttcccaccatattcagaagattcctaacaccttctctttcggtccaaacctataacaacattataacaatttactaattagaaaaccgaagt |
220 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | |
|
|
| T |
37146656 |
cacctcctttcccaccatgttcagaagatttctaatgccttctctttcggtccaaacctataccaacattataacaatttactaattagaaaattgaaat |
37146755 |
T |
|
| Q |
221 |
ttttgtgcattt |
232 |
Q |
| |
|
||||| |||||| |
|
|
| T |
37146756 |
ttttgggcattt |
37146767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University