View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_high_28 (Length: 226)
Name: NF18709_high_28
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 45642680 - 45642466
Alignment:
| Q |
1 |
cacattacacaacatctccaccttctccaccacccatcaacgctaacaccgtcaattctgacacatcaacgccaaatccatgacccatcaacgccaattc |
100 |
Q |
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| T |
45642680 |
cacattacacaacatctccaccttctccaccacccatcaacgctaacaccgtcaattctgacacatcaacgccaaatccatgacccatcaacgccaattc |
45642581 |
T |
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| Q |
101 |
cgaaa-cctattccccatcgttattcatttcagacta------aacaacaacaacaaagaacttgtagttattcaaactcagatctaacgattccaaacc |
193 |
Q |
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| T |
45642580 |
caaaaccctattccccatcgttattcatttcagactaaacaacaacaacaacaacaaagaacttgtagttattcaaactcagatctaacgattccaaaca |
45642481 |
T |
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| Q |
194 |
cgtaaacgaagtaca |
208 |
Q |
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||||||||||||||| |
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| T |
45642480 |
cgtaaacgaagtaca |
45642466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 43437303 - 43437339
Alignment:
| Q |
160 |
agttattcaaactcagatctaacgattccaaacccgt |
196 |
Q |
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|||||||| |||||||||||||| ||||||||||||| |
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| T |
43437303 |
agttattcgaactcagatctaacaattccaaacccgt |
43437339 |
T |
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