View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_high_4 (Length: 511)
Name: NF18709_high_4
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Original strand, 53858787 - 53859262
Alignment:
| Q |
20 |
caccatatatctactaaaacattaatagtaagatgtgagatcacgtgacagggtgacttggattgataacattggtccatacatgctgtcaatttcaaca |
119 |
Q |
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| T |
53858787 |
caccatatatctactaaaacattaatagtaagatgtgagatcacgtgacagggtgacttggattcataacattggtccatacatgctgtcaatttcaaca |
53858886 |
T |
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| Q |
120 |
aattagattgaatccacatatgaaaaatttattatatggtcgaaagagtatgtggatcccactaagatttaatacgagattggataaagaaagaagcatt |
219 |
Q |
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| T |
53858887 |
aattagattgaatccacatatgaaaaatttattatatggtcgaaagagtatgtggatcccactaagatttaatacgagattggataaagaaagaagcatt |
53858986 |
T |
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| Q |
220 |
ggcccacaatttgggaattataaaaaagcatgataaaaggttgaaatttggaagaagagcaaattggttggaaacacaattagccacgttttagggaggt |
319 |
Q |
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| T |
53858987 |
ggcccacaatttgggaattat-aaaaagcatgataaaaggttgaaatttggaagaagagcaaattggttggaaacacaattagccacgttttagggaggt |
53859085 |
T |
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| Q |
320 |
aggtcctacacgtagaaaggagttgaagatattaaaaagaacacgttttgctttgttgctgctgtgaggattgatgaactaggaacgggtctttttcttg |
419 |
Q |
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| T |
53859086 |
aggtcctacacgtagaaaggagttgaagatattaaaaagaacacgttttgctttgt---tgctgtgaggattgatgaactaggaacgggtctttttcttg |
53859182 |
T |
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| Q |
420 |
caactacttttcatgttttggtgtttataatctctatccttatccttgttggtttttaattcatcaatgcctctttccta |
499 |
Q |
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| T |
53859183 |
caactacttttcatgttttggtgtttataatctctatccttatccttgttggtttttaattcatcaatgcctctttccta |
53859262 |
T |
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