View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18709_low_10 (Length: 393)

Name: NF18709_low_10
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18709_low_10
NF18709_low_10
[»] chr4 (18 HSPs)
chr4 (139-377)||(49833719-49833957)
chr4 (11-102)||(49833975-49834063)
chr4 (16-99)||(27769073-27769152)
chr4 (16-99)||(32683141-32683220)
chr4 (16-99)||(50019200-50019279)
chr4 (16-98)||(29649137-29649215)
chr4 (16-99)||(23988206-23988285)
chr4 (16-99)||(32323078-32323158)
chr4 (16-99)||(48262084-48262163)
chr4 (16-99)||(48531927-48532006)
chr4 (16-99)||(54342156-54342235)
chr4 (11-99)||(5442397-5442479)
chr4 (16-99)||(37827537-37827621)
chr4 (64-99)||(37916861-37916896)
chr4 (64-99)||(41726159-41726194)
chr4 (64-99)||(51321920-51321955)
chr4 (64-102)||(30966188-30966226)
chr4 (16-99)||(49500646-49500725)
[»] chr3 (18 HSPs)
chr3 (16-99)||(11432556-11432635)
chr3 (16-99)||(20833907-20833986)
chr3 (16-99)||(36673266-36673345)
chr3 (16-99)||(50902424-50902507)
chr3 (16-99)||(17947227-17947308)
chr3 (16-104)||(51736868-51736953)
chr3 (16-99)||(10661196-10661276)
chr3 (16-99)||(10728131-10728212)
chr3 (16-99)||(27239333-27239411)
chr3 (16-99)||(44904963-44905042)
chr3 (16-99)||(52617093-52617172)
chr3 (16-93)||(23752515-23752589)
chr3 (64-99)||(37455889-37455924)
chr3 (16-99)||(18750642-18750723)
chr3 (16-99)||(45254561-45254640)
chr3 (16-99)||(50761228-50761309)
chr3 (16-99)||(54629859-54629941)
chr3 (64-99)||(48380203-48380238)
[»] chr8 (15 HSPs)
chr8 (11-99)||(42304747-42304833)
chr8 (16-99)||(14781254-14781333)
chr8 (16-99)||(18957840-18957919)
chr8 (16-99)||(19716985-19717066)
chr8 (16-99)||(32498900-32498979)
chr8 (16-99)||(44724903-44724982)
chr8 (16-99)||(4030449-4030529)
chr8 (16-99)||(18305083-18305162)
chr8 (64-99)||(9287612-9287647)
chr8 (64-99)||(34893411-34893446)
chr8 (64-99)||(37857930-37857965)
chr8 (16-98)||(43307661-43307739)
chr8 (64-99)||(10294518-10294553)
chr8 (64-98)||(31626353-31626387)
chr8 (64-104)||(40012295-40012335)
[»] chr7 (23 HSPs)
chr7 (16-99)||(21068365-21068446)
chr7 (16-99)||(23102300-23102379)
chr7 (16-99)||(29613910-29613990)
chr7 (11-99)||(29893960-29894045)
chr7 (16-99)||(510655-510736)
chr7 (16-99)||(3023934-3024012)
chr7 (16-99)||(7994165-7994244)
chr7 (16-99)||(12741382-12741462)
chr7 (16-99)||(28343319-28343398)
chr7 (16-99)||(30823596-30823675)
chr7 (16-99)||(37971512-37971591)
chr7 (16-99)||(39785105-39785186)
chr7 (64-102)||(48136365-48136403)
chr7 (16-99)||(9881407-9881485)
chr7 (16-99)||(18839303-18839382)
chr7 (11-99)||(28034238-28034330)
chr7 (16-99)||(39029062-39029141)
chr7 (16-99)||(12893114-12893195)
chr7 (65-104)||(32884813-32884852)
chr7 (64-99)||(37328880-37328915)
chr7 (64-99)||(40459839-40459874)
chr7 (68-99)||(46035455-46035486)
chr7 (64-99)||(46405307-46405342)
[»] chr6 (6 HSPs)
chr6 (16-99)||(31068429-31068508)
chr6 (16-99)||(30384178-30384257)
chr6 (16-99)||(31896646-31896725)
chr6 (64-99)||(7498153-7498188)
chr6 (64-99)||(4199593-4199628)
chr6 (16-55)||(34774394-34774433)
[»] chr5 (9 HSPs)
chr5 (16-99)||(13999220-13999300)
chr5 (16-99)||(13926941-13927021)
chr5 (11-99)||(13717099-13717183)
chr5 (11-99)||(40012823-40012908)
chr5 (16-99)||(1459301-1459381)
chr5 (64-99)||(4239586-4239621)
chr5 (64-99)||(4549370-4549405)
chr5 (64-99)||(5950467-5950502)
chr5 (16-99)||(39853361-39853440)
[»] chr2 (16 HSPs)
chr2 (16-99)||(18178281-18178360)
chr2 (16-99)||(26789794-26789873)
chr2 (16-99)||(28845587-28845666)
chr2 (16-99)||(7027914-7027993)
chr2 (16-99)||(25289164-25289243)
chr2 (16-99)||(33136603-33136685)
chr2 (16-99)||(43079492-43079572)
chr2 (64-99)||(214631-214666)
chr2 (64-99)||(379963-379998)
chr2 (64-99)||(10658483-10658518)
chr2 (63-101)||(3576807-3576845)
chr2 (16-93)||(13832680-13832754)
chr2 (63-99)||(30239167-30239203)
chr2 (64-99)||(2374030-2374065)
chr2 (11-99)||(3464591-3464675)
chr2 (70-99)||(20156350-20156379)
[»] chr1 (15 HSPs)
chr1 (16-99)||(6313585-6313664)
chr1 (16-99)||(25613101-25613180)
chr1 (16-99)||(29395544-29395623)
chr1 (11-99)||(28386564-28386649)
chr1 (16-99)||(49231993-49232072)
chr1 (16-95)||(51702603-51702678)
chr1 (16-98)||(29220121-29220202)
chr1 (63-99)||(46329020-46329056)
chr1 (64-99)||(48176652-48176687)
chr1 (64-99)||(25830366-25830401)
chr1 (64-99)||(38535263-38535298)
chr1 (64-99)||(38557481-38557516)
chr1 (64-99)||(45273614-45273649)
chr1 (69-99)||(15835374-15835404)
chr1 (70-99)||(1923102-1923131)
[»] scaffold0940 (1 HSPs)
scaffold0940 (16-99)||(3580-3659)
[»] scaffold0054 (1 HSPs)
scaffold0054 (16-99)||(36406-36486)
[»] scaffold0042 (1 HSPs)
scaffold0042 (16-99)||(57176-57255)
[»] scaffold1521 (1 HSPs)
scaffold1521 (64-99)||(1298-1333)
[»] scaffold0383 (1 HSPs)
scaffold0383 (64-99)||(16153-16188)
[»] scaffold0152 (1 HSPs)
scaffold0152 (64-99)||(29386-29421)
[»] scaffold0492 (1 HSPs)
scaffold0492 (69-99)||(12094-12124)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 139 - 377
Target Start/End: Complemental strand, 49833957 - 49833719
Alignment:
Q  139 ttacctttattgaactattttaaatcaaaaaatgaattctatttgggtgggtaaccgtcccatgatatgatatgggtacattcttttctaagttgcgcac 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49833957 ttacctttattgaactattttaaatcaaaaaatgaattctatttgggtgggtaaccgtcccatgatatgatatgggtacattcttttctaagttgcgcac 49833858  T
Q  239 cctattattaagcaacaaagcgacagacactatcataaacgttttccacgactcaaaagattcacatagagaaatggaattggagggcatagaacaccga 338  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49833857 cctattattaagcaacaaagcgacagacactgtcataaacgttttccacgactcaaaagattcacatagagaaatggaattggagggcatagaacaccga 49833758  T
Q  339 actgtaaccgtcaatggcatcaatatgcacatagctgaa 377  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49833757 actgtaaccgtcaatggcatcaatatgcacatagctgaa 49833719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 49834063 - 49833975
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaatatac 102  Q
    |||| ||||||||||||| ||||| ||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||    
T  49834063 acaaaatcaatacaatctcacataatcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaatatac 49833975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 27769073 - 27769152
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  27769073 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 27769152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 32683220 - 32683141
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  32683220 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 32683141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 50019200 - 50019279
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||||||||||||        |||||||||||||||||||||||| |||||||||||    
T  50019200 atcaatacaatctcacacagtcttttaaaattttaaagactttt----tttattaaaatagtcttttaaaattctaatccaata 50019279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 29649215 - 29649137
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaat 98  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||    
T  29649215 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaat 29649137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 23988206 - 23988285
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||||| ||||||||||| |||||||         ||||||||||||||||||||||||||||||||||||    
T  23988206 atcaatacaatctcacatattcttttaaaatcttaaagattttt----tttattaaaatagtcttttaaaatcctaatccaata 23988285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 32323078 - 32323158
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| | ||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  32323078 atcaatacaatctcacacaatcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaata 32323158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 48262084 - 48262163
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||| | ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  48262084 atcaatacaatttcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 48262163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 48532006 - 48531927
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||| | ||||||||||| ||||||||        ||||||||||||||||||||||||||||||| ||||    
T  48532006 atcaatacaatcttacagaatcttttaaaatcttaaagacttat----tttattaaaatagtcttttaaaatcctaatcaaata 48531927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 54342156 - 54342235
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||||||||||||||| |||||||||||    
T  54342156 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaattctaatccaata 54342235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 5442397 - 5442479
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||| ||||||||||||| |||  |||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  5442397 acaaaatcaatacaatctcaca--gtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 5442479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 37827621 - 37827537
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnattt-attaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||| ||||||||||||||||||||| |||||||||||    
T  37827621 atcaatacaatctcacacagtcttttaaaatcttaaagacttttttttttttattaaaatagtcttttaaaattctaatccaata 37827537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 37916861 - 37916896
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||| |||||||||||||||||||    
T  37916861 tttattaaaatagtctcttaaaatcctaatccaata 37916896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 41726159 - 41726194
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41726159 tttattaaaatagtcttttaaaatcataatccaata 41726194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 51321920 - 51321955
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||| |||||||||||||||||||||    
T  51321920 tttattaaaatagtattttaaaatcctaatccaata 51321955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 30966226 - 30966188
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaatatac 102  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  30966226 tttattaaaataatcttttaaaatcataatccaatatac 30966188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 49500725 - 49500646
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||  || ||||||||||||| |||||||        ||||||||||||||||||| ||||| |||||||||||    
T  49500725 atcaatacaatctcgcacagtcttttaaaatcttaaaga----ttttatttattaaaatagtctttcaaaattctaatccaata 49500646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 11432556 - 11432635
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  11432556 atcaatacaatctcacacagtcttttaaaattttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 11432635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 20833907 - 20833986
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||| | ||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  20833907 atcaatacaatcttacacaatcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 20833986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 36673345 - 36673266
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  36673345 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 36673266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 50902507 - 50902424
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||| ||||||||||    
T  50902507 atcaatacaatctcacacagtcttttaaaatcttaaagactttttttttttattaaaatagtcttttaaaatcttaatccaata 50902424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 17947227 - 17947308
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| |||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  17947227 atcaatacaatctcacatagtcttttaaaattttaaaa--gatttttttttattaaaatagtcttttaaaatcctaatccaata 17947308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 51736953 - 51736868
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaatatactc 104  Q
    |||||||||||||  |||||||||||||||| ||||||||        |||||||||||||| ||||||||||||||||||||| ||||    
T  51736953 atcaatacaatctcgcatagtcttttaaaatcttaaagacttttt---tttattaaaatagtattttaaaatcctaatccaatacactc 51736868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 10661196 - 10661276
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| | ||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  10661196 atcaatacaatctcacacaatcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaata 10661276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 10728212 - 10728131
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| | ||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  10728212 atcaatacaatctcacacattcttttaaaatcttaaagactttttt--tttattaaaatagtcttttaaaatcctaatccaata 10728131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 27239411 - 27239333
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||| ||||||||||||| ||||| ||        ||||||||||||||||||||||||||||||||||||    
T  27239411 atcaatacaatcttacacagtcttttaaaatcttaaa-actttt----tttattaaaatagtcttttaaaatcctaatccaata 27239333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 44905042 - 44904963
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||| ||||||||||    
T  44905042 atcaatacaatctcacacagtcttttaaaatcttaaagaccttt----tttattaaaatagtcttttaaaatcttaatccaata 44904963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 52617172 - 52617093
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||| ||||||||||||||||||||||||    
T  52617172 atcaatacaatctcacaaagtcttttaaaatcttaaagactttt----tttattaaaattgtcttttaaaatcctaatccaata 52617093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 23752589 - 23752515
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaat 93  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||    
T  23752589 atcaatacaatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaat 23752515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 37455889 - 37455924
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  37455889 tttattaaaatagtcttttaaaatcctaatccaata 37455924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 18750642 - 18750723
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| |||||||         |||||||||||||||||||||||||||||| |||||    
T  18750642 atcaatacaatctcacacagtcttttaaaatcttaaagattttttt--tttattaaaatagtcttttaaaatcctaattcaata 18750723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 45254640 - 45254561
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| |||||||         ||||||||||||||||||||||||||||||| ||||    
T  45254640 atcaatacaatctcacacagtcttttaaaatcttaaagattttt----tttattaaaatagtcttttaaaatcctaatctaata 45254561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 50761309 - 50761228
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| | ||||||||||| ||||||||        ||||||||||||||||||||| ||||||||||||||    
T  50761309 atcaatacaatctcacacaatcttttaaaatcttaaagactttttt--tttattaaaatagtcttttaatatcctaatccaata 50761228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 54629859 - 54629941
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| |||||||||| || ||||||||        ||||||||||| ||||||||||||||||||||||||    
T  54629859 atcaatacaatctcacacagtcttttaacatcttaaagacttttttt-tttattaaaattgtcttttaaaatcctaatccaata 54629941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 48380203 - 48380238
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||| |||||||||||    
T  48380203 tttattaaaatagtcttttaaaattctaatccaata 48380238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 42304833 - 42304747
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||| ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  42304833 acaaaatcaatacaatctcacacagtcttttaaaatcttaaagactttttt--tttattaaaatagtcttttaaaatcctaatccaata 42304747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 14781333 - 14781254
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  14781333 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 14781254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 18957919 - 18957840
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  18957919 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 18957840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 19717066 - 19716985
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  19717066 atcaatacaatctcacacagtcttttaaaatcttaaagactttttt--tttattaaaatagtcttttaaaatcctaatccaata 19716985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 32498900 - 32498979
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  32498900 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 32498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 44724982 - 44724903
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  44724982 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 44724903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 4030529 - 4030449
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||| ||||    
T  4030529 atcaatacaatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatctaata 4030449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 18305162 - 18305083
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||| ||||||||||||||||||||||||    
T  18305162 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaattgtcttttaaaatcctaatccaata 18305083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 9287647 - 9287612
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  9287647 tttattaaaatagtcttttaaaatcctaatccaata 9287612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 34893411 - 34893446
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  34893411 tttattaaaatagtcttttaaaatcctaatccaata 34893446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 37857930 - 37857965
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  37857930 tttattaaaatagtcttttaaaatcctaatccaata 37857965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 43307739 - 43307661
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaat 98  Q
    |||||| |||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||| |||||||||    
T  43307739 atcaatccaatctcacacagtcttttaaaatcttaaagactctt----tttattaaaatagtcttttaaaatcttaatccaat 43307661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 10294553 - 10294518
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||| |||||||||||||||||||||    
T  10294553 tttattaaaatagtgttttaaaatcctaatccaata 10294518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 31626353 - 31626387
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaat 98  Q
    |||||||||||||| ||||||||||||||||||||    
T  31626353 tttattaaaatagtgttttaaaatcctaatccaat 31626387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 40012335 - 40012295
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaatatactc 104  Q
    |||||||||||||| |||||||||| |||||||||| ||||    
T  40012335 tttattaaaatagtattttaaaatcttaatccaatacactc 40012295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 21068365 - 21068446
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| |||| |||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  21068365 atcaatacaatctcacacagtcatttaaaattttaaagactttttt--tttattaaaatagtcttttaaaatcctaatccaata 21068446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 23102300 - 23102379
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  23102300 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 23102379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 29613990 - 29613910
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  29613990 atcaatacaatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaata 29613910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 29893960 - 29894045
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||| ||||||||||||| ||| | ||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  29893960 acaaaatcaatacaatctcacacaatcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaata 29894045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 510655 - 510736
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||||||||||||||||| |||||||||    
T  510655 atcaatacaatctcacacagtcttttaaaatcttaaagactttttt--tttattaaaatagtcttttaaaatcccaatccaata 510736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 3023934 - 3024012
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||| ||        ||||||||||||||||||||||||||||||||||||    
T  3023934 atcaatacaatctcacacagtcttttaaaatcttaaaaacttt-----tttattaaaatagtcttttaaaatcctaatccaata 3024012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 7994165 - 7994244
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||| |||||||||||||||||||||||    
T  7994165 atcaatacaatctcacacagtcttttaaaatcttaaagactttc----tttattaaaatactcttttaaaatcctaatccaata 7994244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 12741382 - 12741462
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||| ||||||||||    
T  12741382 atcaatacaatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcttaatccaata 12741462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 28343319 - 28343398
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||||||||||||||||| |||||||||    
T  28343319 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcccaatccaata 28343398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 30823596 - 30823675
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||||||||||||||||||||| |||||    
T  30823596 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaattcaata 30823675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 37971591 - 37971512
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| |||  |||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  37971591 atcaatacaatctcacacggtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 37971512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 39785105 - 39785186
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||  || ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  39785105 atcaatacaatctcgcacagtcttttaaaatcttaaagactttttt--tttattaaaatagtcttttaaaatcctaatccaata 39785186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 48136403 - 48136365
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaatatac 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48136403 tttattaaaatagtcttttaaaatcctaatccaatatac 48136365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 9881485 - 9881407
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| |||||||         ||||||||||| ||||||||||||||||||||||||    
T  9881485 atcaatacaatctcacacagtcttttaaaatcttaaagaattt-----tttattaaaattgtcttttaaaatcctaatccaata 9881407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 18839303 - 18839382
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| | ||||||||||| ||||||||        |||||||||||| |||||||||||||||||||||||    
T  18839303 atcaatacaatctcacacaatcttttaaaatcttaaagactttt----tttattaaaataatcttttaaaatcctaatccaata 18839382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 28034330 - 28034238
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagac----nnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||            |||||||||||||||||||||||||||||| |||||    
T  28034330 acaaaatcaatacaatctcacacagtcttttaaaattttaaagactttttattttattttattaaaatagtcttttaaaatcctaattcaata 28034238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 39029062 - 39029141
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||| | | ||||||||| ||||||||        |||||||||||| |||||||||||||||||||||||    
T  39029062 atcaatacaatcttacacaatattttaaaatcttaaagactttt----tttattaaaataatcttttaaaatcctaatccaata 39029141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 12893195 - 12893114
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaatttt-aaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| |||||||||||||||| ||||||        |||||| ||||||| |||||||||||||||||||||    
T  12893195 atcaatacaatctcacaaagtcttttaaaattttaaaagacctttt---tttattgaaatagtattttaaaatcctaatccaata 12893114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 32884813 - 32884852
Alignment:
Q  65 ttattaaaatagtcttttaaaatcctaatccaatatactc 104  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  32884813 ttattaaaatagtcttttaaaatcttaatccaatacactc 32884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 37328880 - 37328915
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||| |||||||||||    
T  37328880 tttattaaaatagtcttttaaaattctaatccaata 37328915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 40459874 - 40459839
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||| |||||||||||    
T  40459874 tttattaaaatagtcttttaaaattctaatccaata 40459839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 46035486 - 46035455
Alignment:
Q  68 ttaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||    
T  46035486 ttaaaatagtcttttaaaatcctaatccaata 46035455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 46405342 - 46405307
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||| ||||    
T  46405342 tttattaaaatagtcttttaaaatcctaatctaata 46405307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 31068429 - 31068508
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  31068429 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 31068508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 30384257 - 30384178
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| |||||| |        ||||||||||||||||||||||||||||||||||||    
T  30384257 atcaatacaatctcacacagtcttttaaaatcttaaaggctttt----tttattaaaatagtcttttaaaatcctaatccaata 30384178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 31896646 - 31896725
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||| ||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  31896646 atcaatacaatctcacacagtattttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 31896725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 7498153 - 7498188
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  7498153 tttattaaaatagtcttttaaaatcctaatccaata 7498188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 4199628 - 4199593
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||| |||||||||||||||||||||    
T  4199628 tttattaaaatagtgttttaaaatcctaatccaata 4199593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 34774394 - 34774433
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagac 55  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  34774394 atcaatacaatcttacacagtcttttaaaatcttaaagac 34774433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 13999300 - 13999220
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  13999300 atcaatacaatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaata 13999220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 13926941 - 13927021
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| |||||||| |||| ||||||||       |||||||||||||||||||||||||||||||||||||    
T  13926941 atcaatacaatctcacacagtctttttaaatcttaaagactttt---atttattaaaatagtcttttaaaatcctaatccaata 13927021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 13717099 - 13717183
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||| ||||||||||||| ||| | ||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  13717099 acaaaatcaatacaatctcacacaatcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 13717183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 40012908 - 40012823
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||| ||||||||||||| |||  |||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  40012908 acaaaatcaatacaatctcacactgtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaata 40012823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 1459381 - 1459301
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||||||||||||||||||||| |||||    
T  1459381 atcaatacaatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaattcaata 1459301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 4239621 - 4239586
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  4239621 tttattaaaatagtcttttaaaatcctaatccaata 4239586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 4549405 - 4549370
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4549405 tttattaaaatagtcttttaaaatcctaatcgaata 4549370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 5950467 - 5950502
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5950467 tttattaaaatagtcttttaaaatcataatccaata 5950502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 39853361 - 39853440
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| | ||||||        | |||||||||||||||||||||| |||||||||||    
T  39853361 atcaatacaatctcacagagtcttttaaaatctaaaagactttt----tatattaaaatagtcttttaaaattctaatccaata 39853440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 18178281 - 18178360
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  18178281 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 18178360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 26789794 - 26789873
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  26789794 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 26789873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 28845587 - 28845666
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||||||||||| ||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  28845587 atcaatacaatctcacatagtctttaaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 28845666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 7027914 - 7027993
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||| |||||||||||||||||||||||    
T  7027914 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaataatcttttaaaatcctaatccaata 7027993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 25289164 - 25289243
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| |||||||         ||||||||||||||||||||||||||||||||||||    
T  25289164 atcaatacaatctcacacagtcttttaaaatcttaaagattttt----tttattaaaatagtcttttaaaatcctaatccaata 25289243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33136603 - 33136685
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||| ||||||||||||||||||||||||    
T  33136603 atcaatacaatctcacacagtcttttaaaatcttaaagacttttttt-tttattaaaattgtcttttaaaatcctaatccaata 33136685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 43079492 - 43079572
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||||||||||||||| |||||||||||    
T  43079492 atcaatacaatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaattctaatccaata 43079572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 214666 - 214631
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  214666 tttattaaaatagtcttttaaaatcctaatccaata 214631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 379963 - 379998
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  379963 tttattaaaatagtcttttaaaatcctaatccaata 379998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 10658483 - 10658518
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  10658483 tttattaaaatagtcttttaaaatcctaatccaata 10658518  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 3576807 - 3576845
Alignment:
Q  63 atttattaaaatagtcttttaaaatcctaatccaatata 101  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  3576807 atttattaaaataatcttttaaaatcctaatccaatata 3576845  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 13832754 - 13832680
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaat 93  Q
    ||||||||||||| ||| ||||||||||||| |||||||         ||||||||||||||||||||||||||||||    
T  13832754 atcaatacaatctcacacagtcttttaaaatcttaaagatttttt---tttattaaaatagtcttttaaaatcctaat 13832680  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 30239203 - 30239167
Alignment:
Q  63 atttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||| ||||||||||    
T  30239203 atttattaaaatagtcttttaaaatcataatccaata 30239167  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 2374030 - 2374065
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||||||| |||||    
T  2374030 tttattaaaatagtcttttaaaatcctaatacaata 2374065  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 3464591 - 3464675
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||| ||||||| ||||| ||| ||||||||||||| ||||||||        || |||||||||||||| ||||||||||||||||||    
T  3464591 acaaaatcaatagaatctgacacagtcttttaaaatcttaaagactttt----ttaattaaaatagtcttgtaaaatcctaatccaata 3464675  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 20156379 - 20156350
Alignment:
Q  70 aaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||    
T  20156379 aaaatagtcttttaaaatcctaatccaata 20156350  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 6313585 - 6313664
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  6313585 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 6313664  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 25613101 - 25613180
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  25613101 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 25613180  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 29395623 - 29395544
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  29395623 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 29395544  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 28386649 - 28386564
Alignment:
Q  11 acaatatcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||| ||||||| ||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  28386649 acaaaatcaatagaatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaata 28386564  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 49231993 - 49232072
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||| ||||||||||||||||||||||||    
T  49231993 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaattgtcttttaaaatcctaatccaata 49232072  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 51702603 - 51702678
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatcc 95  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||    
T  51702603 atcaatacaatctcacacagtcttttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatcc 51702678  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 29220121 - 29220202
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaat 98  Q
    ||||||||||||| ||| ||||||||||||| ||||||||        |||||||||||||||||||||||| ||||||||||    
T  29220121 atcaatacaatctcacacagtcttttaaaatcttaaagacttttttt-tttattaaaatagtcttttaaaattctaatccaat 29220202  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 46329020 - 46329056
Alignment:
Q  63 atttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||||||||||||||    
T  46329020 atttattaaaatagtcttttaaaatcctaatccaata 46329056  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 48176687 - 48176652
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||||||||    
T  48176687 tttattaaaatagtcttttaaaatcctaatccaata 48176652  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 25830401 - 25830366
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||||||| |||||    
T  25830401 tttattaaaatagtcttttaaaatcctaattcaata 25830366  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 38535298 - 38535263
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  38535298 tttattaaaataatcttttaaaatcctaatccaata 38535263  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 38557516 - 38557481
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  38557516 tttattaaaataatcttttaaaatcctaatccaata 38557481  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 45273614 - 45273649
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||| |||||||||||||||||||||||    
T  45273614 tttattaaaataatcttttaaaatcctaatccaata 45273649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 15835374 - 15835404
Alignment:
Q  69 taaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||||||||    
T  15835374 taaaatagtcttttaaaatcctaatccaata 15835404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 1923131 - 1923102
Alignment:
Q  70 aaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||||||||||||||||||||    
T  1923131 aaaatagtcttttaaaatcctaatccaata 1923102  T

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Target: scaffold0940 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 3659 - 3580
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||| ||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  3659 atcaatacaatctcacacagtctcttaaaatcttaaagactttt----tttattaaaatagtcttttaaaatcctaatccaata 3580  T

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Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 36486 - 36406
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||| ||||| ||| ||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||    
T  36486 atcaatataatctcacacagtcttttaaaatcttaaagacttttt---tttattaaaatagtcttttaaaatcctaatccaata 36406  T

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Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 57255 - 57176
Alignment:
Q  16 atcaatacaatcttacatagtcttttaaaattttaaagacnnnnnnnatttattaaaatagtcttttaaaatcctaatccaata 99  Q
    ||||||||||||| ||| ||||||||||||| |||| |||        |||||||||||||||||||||||| |||||||||||    
T  57255 atcaatacaatctcacacagtcttttaaaatcttaaggactttt----tttattaaaatagtcttttaaaattctaatccaata 57176  T

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Target: scaffold1521 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1521
Description:

Target: scaffold1521; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 1333 - 1298
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||||||| |||||    
T  1333 tttattaaaatagtcttttaaaatcctaattcaata 1298  T

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Target: scaffold0383 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 16188 - 16153
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||||||| |||||    
T  16188 tttattaaaatagtcttttaaaatcctaattcaata 16153  T

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Target: scaffold0152 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 29386 - 29421
Alignment:
Q  64 tttattaaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||||||| |||||    
T  29386 tttattaaaatagtcttttaaaatcctaattcaata 29421  T

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Target: scaffold0492 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 12094 - 12124
Alignment:
Q  69 taaaatagtcttttaaaatcctaatccaata 99  Q
    |||||||||||||||||||||||||||||||    
T  12094 taaaatagtcttttaaaatcctaatccaata 12124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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