View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_low_16 (Length: 308)
Name: NF18709_low_16
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 6811805 - 6812084
Alignment:
| Q |
14 |
acctgtgtggcttttatcggtagggtcgtgtatcactctctcaagccttagtagttcttatataatagctttgcaaatgaccaccccaggtgatgtttat |
113 |
Q |
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| T |
6811805 |
acctatgtggcttttatcggtagggtcgtgtatcactctctcaagccttagtagttcttatataatagctttgcaaatgaccaccccaggtgatgtttat |
6811904 |
T |
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| Q |
114 |
tatggagctatgcgcaaatctgttctaatcgctaattatgcttgtataggattgttaacgattatttgtttgtatcttacactaaggtttgttatttgga |
213 |
Q |
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| T |
6811905 |
tatggagctaggcgcaaatctgttctaatcgctaattatgcttgtattggattgttagcgattatttgtttgtaccttacactaaggtttgttatttgga |
6812004 |
T |
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| Q |
214 |
gagtgaaagtgtactggaaaagaaaaggagtaatcaagcatgcaaaaactccaaagtaccttacactaaggttagttact |
293 |
Q |
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| T |
6812005 |
gagtgaaagtgtactggaaaagaaaaggagtaattaagcaggcaaaaactccaaagtaccttacactaaggttagttact |
6812084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 6812064 - 6812143
Alignment:
| Q |
189 |
cttacactaaggtttgttatttggagagtgaaagtgtactggaaaagaaaaggagtaatcaagcatgcaaaaactccaaa |
268 |
Q |
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| T |
6812064 |
cttacactaaggttagttactttgggagtgaaagtgtaccgtaaaagaaaaggagtaattaagaaggcaaaaactccaaa |
6812143 |
T |
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