View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_low_18 (Length: 292)
Name: NF18709_low_18
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 27251975 - 27252240
Alignment:
| Q |
10 |
attattctgtaagactaatttgtcaaaaatgtgtaatattttatagtcttggagactannnnnnnnnnnnnnnnnnnnnnnattacatgcacctttacga |
109 |
Q |
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| T |
27251975 |
attattctgtaagactaattattcaaaaatgtgtaatattttatagtcttggagactatttttgattttttgttttgttttattacatgcacctttacga |
27252074 |
T |
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| Q |
110 |
cttcaataaaatcttttgctatgagtttgtacttaatcatgtctcaacatacacccaattaaaaggagagacaaaaactcatagccatttactcgaaatc |
209 |
Q |
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| T |
27252075 |
cttcaataaaatcttttgctatgagtttgtacttaatcatgtctcaacatacacccaattaaaaggagagacaaaaactcatagccatttactcgaaatt |
27252174 |
T |
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| Q |
210 |
gtcctcatagatgatgatccatggaaggaatgtagcagcatgatctaattttttcctgctgaactt |
275 |
Q |
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| T |
27252175 |
gtcctcatagatgatgatacatggaaggaatgtagcagcatgatctaattttttcctgctgaactt |
27252240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 91 - 275
Target Start/End: Original strand, 21196314 - 21196497
Alignment:
| Q |
91 |
attacatgcacctttacgacttcaataaaatcttttgctatgagtttgtacttaatcatgtctcaacatacacccaattaaaaggagagacaaaaactca |
190 |
Q |
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| T |
21196314 |
attacatgcac-tttacgacttcaataaaatcttttgctatgagtttgtacttaatcatgtctcagcataaacccaattaaaaggagagaccaaaactca |
21196412 |
T |
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| Q |
191 |
tagccatttactcgaaatcgtcctcatagatgatgatccatggaaggaatgtagcagcatgatctaattttttcctgctgaactt |
275 |
Q |
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| T |
21196413 |
tagccatttactcgaagttgtcctcattgatgatgatccatggaaggaatgtagcagcatgatctaattttttcctgctgaactt |
21196497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 21196226 - 21196283
Alignment:
| Q |
10 |
attattctgtaagactaatttgtcaaaaatgtgtaatattttatagtcttggagacta |
67 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21196226 |
attattctgtaagactaattaatcaaaaatgtgtaatattttatagtcttggagacta |
21196283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 27268795 - 27268834
Alignment:
| Q |
28 |
tttgtcaaaaatgtgtaatattttatagtcttggagacta |
67 |
Q |
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| T |
27268795 |
tttgtcaaaattgtgtaatgttttatagtcttggagacta |
27268834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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