View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_low_2 (Length: 532)
Name: NF18709_low_2
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 516
Target Start/End: Original strand, 47536189 - 47536692
Alignment:
| Q |
13 |
aatattcttattcactcgataatagcatatattatactattcaaaacactaattttaatcatcgcaannnnnnnnnnnnngacaaattgtttatattttg |
112 |
Q |
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| T |
47536189 |
aatattcttattcactcgaaaatagcatatattatactattcaaaacactaattttaatcatcgcaatttttgtttttttgacaaattgtttatattttg |
47536288 |
T |
|
| Q |
113 |
ttgttgttgactagattgatgatgtagagaggttattggagataataaagcaagcagtgaaggaagatgcactggttgtgtatactttagctgattcttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47536289 |
ttgttgttgactagattgatgatgtagagaggttattggagataataaagcaagcagtgaaggaagatgcactggttgtgtatactttagctgattcttc |
47536388 |
T |
|
| Q |
213 |
attttcttcagcagctgagaaggcctgcaaattatggggtgtgccttctaccaatgtactaggacccattacagaggccattgcttctcatctgggtgtg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47536389 |
attttcttcagcagctgagaaggcctgcaaattatggggtgtgccttctaccaatgtactaggacccattacagaggccattgcttctcatctgggtgtg |
47536488 |
T |
|
| Q |
313 |
tctccttctggccttcctcgtggtgcttctggcgttcctctctccgatgattactttcgtaggattgaagctattgaattcactatcaagcaagatgacg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47536489 |
tctccttctggccttcctcgtggtgcttctggcgttcctctctccgatgattactttcgtaggattgaagctattgaattcactatcaagcaagatgacg |
47536588 |
T |
|
| Q |
413 |
gggcatctccacagaatcttgccaaggctgatattgttcttaccggggtttcccgaaccgggaagacgcctttgtctatttatcttgctcagaaaggata |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
47536589 |
gggcatctccacagaatcttgccaaggctgatattgttcttaccggggtttcccgaaccgggaagacacctttgtctatttatcttgctcagaaagggta |
47536688 |
T |
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| Q |
513 |
taag |
516 |
Q |
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|||| |
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| T |
47536689 |
taag |
47536692 |
T |
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