View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_low_21 (Length: 261)
Name: NF18709_low_21
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_low_21 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 49521785 - 49521632
Alignment:
| Q |
58 |
tataaaaactttaacgaagatcgggcatatatgtaataactttccaaagatacaatgtgctagtctattggatatattacttttaataacatgacatgag |
157 |
Q |
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| T |
49521785 |
tataaaatctttaacgaagatcgagcatatatgtaataactttccaaagatacaatgtgctagtctattggatatattacttttaataacatgacatgag |
49521686 |
T |
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| Q |
158 |
ggatccctttcatttttgttctaaaaataataacaatatatgttatgatagcag |
211 |
Q |
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| T |
49521685 |
ggatccctttcatttttgttctaaaaatagtaacaatatatgttatgatagcag |
49521632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 38870143 - 38870350
Alignment:
| Q |
20 |
attattatttaaattttaaagcatgcttaccaaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagataca-------- |
111 |
Q |
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| T |
38870143 |
attattatttaaattttaaagcaagcttatcaaattaatataaaatctttaaccaaaatcatgtatatatgtaataacttttcgaagatacaatcaaatg |
38870242 |
T |
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| Q |
112 |
atgtgctagtctattggatatattacttttaa------------taacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atat |
198 |
Q |
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| T |
38870243 |
atgtgccagcctattggatatattacttttaacaagcaacaaattaacatgacat--gggatccc--tcatttttgttctaataataataacaataatat |
38870338 |
T |
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| Q |
199 |
gttatgatagca |
210 |
Q |
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| T |
38870339 |
gtcatgatagca |
38870350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 49521821 - 49521786
Alignment:
| Q |
8 |
aagcaaaggcagattattatttaaattttaaagcat |
43 |
Q |
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| T |
49521821 |
aagcaacggcagattattatttaaattttaaagcat |
49521786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 290225 - 290426
Alignment:
| Q |
20 |
attattatttaaattttaaagcatgcttaccaaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagatacaatg---tg |
116 |
Q |
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| T |
290225 |
attattatttaaattttaaaccatgcttgccagataaatataaaatctttaacaaaaatcatgcatatatgtaataactttccaaagatacaatcaaatg |
290324 |
T |
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| Q |
117 |
ctagtctattggatatattacttttaa------------taacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttat |
203 |
Q |
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| T |
290325 |
atagtcaattggatatattgcatttaacaagcaacaaattaacctgacatg--ggatccctttcatttctgttctaataataacaacaataatatgttat |
290422 |
T |
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| Q |
204 |
gata |
207 |
Q |
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|||| |
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| T |
290423 |
gata |
290426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 3566564 - 3566686
Alignment:
| Q |
20 |
attattatttaaattttaaagcatgcttaccaaataaatataaaaactttaacgaagatcgggcatatatgtaataactttccaaagataca-------- |
111 |
Q |
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| T |
3566564 |
attattatttaaattttaaagcatgcttaccaaataaatataaaa---------aagatcatgcatatttgtaacaactttccaaagatacaatcaaatg |
3566654 |
T |
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| Q |
112 |
atgtgctagtctattggatatattacttttaa |
143 |
Q |
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| T |
3566655 |
atgtgttagtctactggatatattacttttaa |
3566686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 3567185 - 3567261
Alignment:
| Q |
134 |
ttacttttaataacatgacatgagggatccctttcatttttgttctaaaaataataacaat-atatgttatgatagcag |
211 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| |
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| T |
3567185 |
ttacttttaataa--tgacatgggggatccctttcatttttgttctaataatagtaacaataatatgttataatagcag |
3567261 |
T |
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