View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_low_22 (Length: 254)
Name: NF18709_low_22
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_low_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 43486915 - 43486655
Alignment:
| Q |
1 |
aagggaaggacaacaaattcgaccatctggtcatgaaagagaagacaatctaaatgcaattcgtatgagcagtcaatctactccaataacatctagtgaa |
100 |
Q |
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| T |
43486915 |
aagggaaggacaacaaattcgaccatctggtcatgaaagagaagacaatctaaatgcaattcatatgagcagtcaatctactccaataacatctagtgaa |
43486816 |
T |
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| Q |
101 |
gatgaaccattacaacaaatactaaaacgtcaaactgaaggttcctcaacttctcgatcaaccgtcacggaaacaaacgaccaagatacttactccaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
43486815 |
gatgaaccattacaacaaatactaaaacgtcaaactgaaggttcctcaacttctcgatcaaccgtcacggaaacaaatgaccaagaaacttactccaatg |
43486716 |
T |
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| Q |
201 |
ataggtggtt-------atgaacctatatttctattcgcaaaaattatcctcctctctgct |
254 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43486715 |
ataggtggttatgatttatgaacctatatttctattcgcaaaaattatcctcctctgtgct |
43486655 |
T |
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