View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_low_26 (Length: 241)
Name: NF18709_low_26
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 698563 - 698712
Alignment:
| Q |
77 |
tgattttaacgtgtttagatgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatttgaaacttttatctctgcaattg |
176 |
Q |
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| T |
698563 |
tgattttaacttgtttagatgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatatgaaacttttatctctgcaattg |
698662 |
T |
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| Q |
177 |
cttttacatttaaatttaattttcaaactcctttttatataaatgtatat |
226 |
Q |
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| T |
698663 |
cttttacatttaaatttaattttcaaactcctttttatataaatgtatat |
698712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 7087411 - 7087349
Alignment:
| Q |
95 |
atgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatttgaa |
157 |
Q |
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| T |
7087411 |
atgttttcgagtagaattgattttgtttttagaattggttttaacttgaagctagaatttgaa |
7087349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 45369121 - 45369186
Alignment:
| Q |
88 |
tgtttagatgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatt |
153 |
Q |
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| T |
45369121 |
tgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaatt |
45369186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 7328730 - 7328691
Alignment:
| Q |
124 |
tagaattgattttaacttgaagttagaatttgaaactttt |
163 |
Q |
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| T |
7328730 |
tagaattgattctaacttgaagctagaatttgaaactttt |
7328691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 41115499 - 41115422
Alignment:
| Q |
77 |
tgattttaacgtgtttagatgtgttcaagtagaactgcttttgtttgtagaattgattttaacttgaagttagaatttg |
155 |
Q |
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| T |
41115499 |
tgattttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattct-acttgaagctagaatttg |
41115422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 48490552 - 48490590
Alignment:
| Q |
125 |
agaattgattttaacttgaagttagaatttgaaactttt |
163 |
Q |
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| T |
48490552 |
agaattgattataactcgaagttagaatttgaaactttt |
48490590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 44148042 - 44147985
Alignment:
| Q |
124 |
tagaattgattttaacttgaagttagaatttgaaacttttatctctgcaattgctttt |
181 |
Q |
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| T |
44148042 |
tagaattgattataacttgaagttagagtttagagcttttatctccgcaattgatttt |
44147985 |
T |
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