View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18709_low_34 (Length: 212)
Name: NF18709_low_34
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18709_low_34 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 8974498 - 8974709
Alignment:
| Q |
1 |
catggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974498 |
catggcctacaaatattcctgtgttggagtttgggtcacgtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgc |
8974597 |
T |
|
| Q |
101 |
tggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974598 |
tggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaag |
8974697 |
T |
|
| Q |
201 |
gaacttataaaa |
212 |
Q |
| |
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||||| |||||| |
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| T |
8974698 |
gaactcataaaa |
8974709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8963102 - 8963309
Alignment:
| Q |
1 |
catggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgc |
100 |
Q |
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|||||||| ||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
8963102 |
catggcctccaaatgttcctgtgttggattttgggtctcataaagtcgtcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgc |
8963201 |
T |
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| Q |
101 |
tggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaag |
200 |
Q |
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| T |
8963202 |
cggtgtaggagcacttttgaaaggagcacatgctgattggagcccgacagctattaggtcggcaatgatgacaacatcagacatatttgataacactaag |
8963301 |
T |
|
| Q |
201 |
gaacttat |
208 |
Q |
| |
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|||||||| |
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| T |
8963302 |
gaacttat |
8963309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 8945940 - 8945779
Alignment:
| Q |
43 |
aagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggag |
142 |
Q |
| |
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||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| || | |||||||||||| |
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| T |
8945940 |
aagtcttcaacaagttcaaatttttaactggaacatctacgtcatgtcctcatgttgccggtgtaggagcacttttaaaaggagcgcgtgttgattggag |
8945841 |
T |
|
| Q |
143 |
ccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaac |
204 |
Q |
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| T |
8945840 |
ccctgcagctataaggtcggcaattatgacaacatcaaacatatatgataatactaaggaac |
8945779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 8958133 - 8958291
Alignment:
| Q |
46 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccc |
145 |
Q |
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||||||||||||||||| | ||||||||||||||||| ||| |||||||||||| ||||| | ||||||||||||| ||||| | |||||||||||| |
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| T |
8958133 |
tcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcacttttgaaaggagcacacggtgattggagccc |
8958232 |
T |
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| Q |
146 |
tgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaac |
204 |
Q |
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||| || ||| |||| ||||| |||||||| || |||||| |||||||||||||||||| |
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| T |
8958233 |
tgccgcgattcggtcggcaattatgacaacgtcggacataattgataatactaaggaac |
8958291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 9948363 - 9948250
Alignment:
| Q |
90 |
cctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttg |
189 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
9948363 |
cctcatgttgctggtgttggagcacttttgaaaggagcacatgctgattgga-ccctgcagctataaggtcagcaattatgacaacatcaaccatatttg |
9948265 |
T |
|
| Q |
190 |
ataatactaaggaac |
204 |
Q |
| |
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||||| ||||||||| |
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| T |
9948264 |
ataatgctaaggaac |
9948250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 34962762 - 34962559
Alignment:
| Q |
1 |
catggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgc |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||| ||| |||| | |||| ||| |||||||| ||||||||||||||||| | | ||||||||||| |
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| T |
34962762 |
catggcctacaaatgttcctgtgatggaatttgagtctcataaaattttcagcaaattcaatttgataagtggaacatctatggcgtgccctcatgttgc |
34962663 |
T |
|
| Q |
101 |
tggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaag |
200 |
Q |
| |
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||||| | || |||||||||| | ||| |||||||||||| ||||| ||| |||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
34962662 |
aggtgtcgcggcgcttttgaaaggagtgcatagtgattggagcccagcagcaattcggtcggcaataatgacaacatcagacatatttgataattctaag |
34962563 |
T |
|
| Q |
201 |
gaac |
204 |
Q |
| |
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|||| |
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|
| T |
34962562 |
gaac |
34962559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19375856 - 19375659
Alignment:
| Q |
1 |
catggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgc |
100 |
Q |
| |
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||||||| |||||| ||| ||||||||| || ||| | |||||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||||| |
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| T |
19375856 |
catggccaacaaatgttcatgtgttggatttggggacttttaaagtcttcaacaagttcaatttgataagtggaacatctatggcatgtcctcacgttgc |
19375757 |
T |
|
| Q |
101 |
tggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatacta |
198 |
Q |
| |
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||| ||| | ||||||||||| ||||||||||||||||| || |||| ||| | || || || |||||||||||||||||| | || ||||||| |
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| T |
19375756 |
aggtatagcattacttttgaaaggagcacatgttgattggagtccgacagcaattcgttctgcgattatgacaacatcagacataatagacaatacta |
19375659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 21687103 - 21686942
Alignment:
| Q |
43 |
aagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggag |
142 |
Q |
| |
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||||||| ||||| |||||||| || ||||||||||||||||| ||| |||||||| ||||||| ||| ||||| |||| ||||| || |||||| |
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| T |
21687103 |
aagtctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgcttttaaaaggggcacacaatggttggag |
21687004 |
T |
|
| Q |
143 |
ccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaac |
204 |
Q |
| |
|
||| || |||||||||| ||||| |||||||||||||||||||| || ||||||||||||| |
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|
| T |
21687003 |
cccgtcatctattaggtcggcaattatgacaacatcagacatattagacaatactaaggaac |
21686942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 49008292 - 49008430
Alignment:
| Q |
46 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag--ctgcacatgttgattggagc |
143 |
Q |
| |
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|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |||| ||||| ||| ||||||| |
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| T |
49008292 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac-ccttg-ttggagc |
49008389 |
T |
|
| Q |
144 |
cctgcagctattaggtcagcaatgatgacaacatcagacat |
184 |
Q |
| |
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|| ||||| ||||| || || |||||||||||||||||||| |
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| T |
49008390 |
ccagcagccattagatcggctatgatgacaacatcagacat |
49008430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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