View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18709_low_6 (Length: 471)

Name: NF18709_low_6
Description: NF18709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18709_low_6
NF18709_low_6
[»] chr3 (9 HSPs)
chr3 (223-369)||(5565257-5565403)
chr3 (81-214)||(5565170-5565302)
chr3 (181-297)||(31896518-31896633)
chr3 (181-297)||(31945875-31945990)
chr3 (99-179)||(14175288-14175364)
chr3 (181-297)||(31912227-31912342)
chr3 (262-315)||(13539565-13539618)
chr3 (181-297)||(31688234-31688349)
chr3 (106-143)||(13539487-13539524)
[»] chr8 (1 HSPs)
chr8 (43-140)||(43618600-43618697)
[»] chr7 (1 HSPs)
chr7 (91-143)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (83-144)||(31952902-31952963)
[»] chr2 (1 HSPs)
chr2 (414-458)||(274714-274758)
[»] scaffold0003 (2 HSPs)
scaffold0003 (198-297)||(42747-42845)
scaffold0003 (181-297)||(36571-36686)
[»] chr6 (1 HSPs)
chr6 (198-297)||(27444516-27444614)
[»] scaffold0007 (1 HSPs)
scaffold0007 (114-192)||(257658-257735)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 223 - 369
Target Start/End: Original strand, 5565257 - 5565403
Alignment:
Q  223 gagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaacgttaattgttat 322  Q
    |||||| |||||||| ||||| ||| |||| ||||||||||||||| || ||||  ||| ||||||||||||||||||||||||||| ||||||||||||    
T  5565257 gagttgcaccaccgtcgttgaccactgcgtcggaattcgctcttcaccgtgtcgatgtcactgtcagaagcttcttttattttgcaaggttaattgttat 5565356  T
Q  323 tttcagtttttgtattcctcatttctaatactgaatcattcattgat 369  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||    
T  5565357 tttctgcttttgtattcctcatttctaatactgaatcattcattgat 5565403  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 5565170 - 5565302
Alignment:
Q  81 ttttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccac 180  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  5565170 tttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctac-aaaacccacttgttttccaccacgccggagttgcaccac 5565268  T
Q  181 catcgttgaccatcgcatcggaatttgctcttca 214  Q
    | ||||||||||  || |||||||| ||||||||    
T  5565269 cgtcgttgaccactgcgtcggaattcgctcttca 5565302  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 31896633 - 31896518
Alignment:
Q  181 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 280  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||||||| |||||| | ||    
T  31896633 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgtcagtgt 31896535  T
Q  281 cgctgtcagaagcttct 297  Q
    |||||| ||||||||||    
T  31896534 cgctgttagaagcttct 31896518  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 31945990 - 31945875
Alignment:
Q  181 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 280  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||||||| |||| | | ||    
T  31945990 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31945892  T
Q  281 cgctgtcagaagcttct 297  Q
    |||||| ||||||||||    
T  31945891 cgctgttagaagcttct 31945875  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 14175364 - 14175288
Alignment:
Q  99 ctaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcacca 179  Q
    ||||||||||||||||   |||||||| ||||| |||||||||||| |||| ||||||||||||||| |||||||||||||    
T  14175364 ctaaagtaaaagcatc---gtcttcatttcttcgtcctctacaaaa-cccatttgctttccaccacgccggagttgcacca 14175288  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 31912342 - 31912227
Alignment:
Q  181 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 280  Q
    |||||||||||| ||| ||||||| ||||||| | ||  || |||||| |||||| ||||| |||||||||| || |||||||||||| |||| | | ||    
T  31912342 catcgttgaccaccgcgtcggaatatgctcttaaccgtgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31912244  T
Q  281 cgctgtcagaagcttct 297  Q
    |||||| ||||||||||    
T  31912243 cgctgttagaagcttct 31912227  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 13539565 - 13539618
Alignment:
Q  262 ctcttcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaacgttaa 315  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||| |||||    
T  13539565 ctcttcatcgcgtcgggtttgctgtcagaagcttcttttattttgcaaggttaa 13539618  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 31688234 - 31688349
Alignment:
Q  181 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 280  Q
    |||||||||||| ||| || |||| ||||||| | |||  | |||||| |||||| ||||| ||||||||||  | |||||||||||| |||| | | ||    
T  31688234 catcgttgaccaccgcgtcagaatatgctcttaaccgcgtcggagttgcaccacccttgttaatcaccgcgtcag-attcgctcttcatcgcgccagtgt 31688332  T
Q  281 cgctgtcagaagcttct 297  Q
    |||||| ||||||||||    
T  31688333 cgctgttagaagcttct 31688349  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 13539487 - 13539524
Alignment:
Q  106 aaaagcatcatcgtcttcatctcttcatcctctacaaa 143  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13539487 aaaagcatcattgtcttcatctcttcatcctctgcaaa 13539524  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 43618697 - 43618600
Alignment:
Q  43 acacaaaaactcttcttcttattccctcatttcgttaattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctac 140  Q
    |||||||||| ||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43618697 acacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcttctac 43618600  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 7854246 - 7854298
Alignment:
Q  91 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaa 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctgcaaa 7854298  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 31952963 - 31952902
Alignment:
Q  83 ttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaa 144  Q
    |||| |||| ||||||||||| ||||  ||||||| ||||||||||||||||||||||||||    
T  31952963 ttttggcctcctcccactaaaataaagccatcatcatcttcatctcttcatcctctacaaaa 31952902  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 274714 - 274758
Alignment:
Q  414 acaagatatcaccattactggtgcgagcaccttgcctggtgatga 458  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  274714 acaagatattaccattactggtgccagcaccttgcctggtgatga 274758  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 42845 - 42747
Alignment:
Q  198 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttct 297  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||||| | |||  | | |||||||| ||||||||||    
T  42845 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 42747  T

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Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 36686 - 36571
Alignment:
Q  181 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggt 280  Q
    ||||||||| || ||| | ||||| ||||||| | ||| || |||||| | |||||||||| ||||||| || ||| ||||||||||| |||| | | ||    
T  36686 catcgttgatcaccgcgttggaatatgctcttaaccgcgccggagttgcatcaccgttgttaatcaccgtgtcgga-ttcgctcttcatcgcgccagtgt 36588  T
Q  281 cgctgtcagaagcttct 297  Q
    |||||| ||||||||||    
T  36587 cgctgttagaagcttct 36571  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 27444516 - 27444614
Alignment:
Q  198 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcttcaacgcgtcggggtcgctgtcagaagcttct 297  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||||| | |||  | | |||||||| ||||||||||    
T  27444516 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 27444614  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 257658 - 257735
Alignment:
Q  114 catcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccaccatcgttgacca 192  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||||| ||||| |||||||  |||||  ||||||||||    
T  257658 catcgtcttcatttcttcgtcctctac-aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

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