View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_high_12 (Length: 287)
Name: NF1870_high_12
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 49412534 - 49412789
Alignment:
| Q |
9 |
agcataggattgtctctattcatcacattctttaagaaggcaatgtgtgcacgaaaagagtagtttgaaatgaagaataaaaaagaggaaattattggac |
108 |
Q |
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| T |
49412534 |
agcatatgattgtctctattcatcacattctttaagaagtctatgtgtgcacgaaaagagtagtttgaaatgaagaataaaaaagaggaaattattggaa |
49412633 |
T |
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| Q |
109 |
tgaagtaaggaaaagttagtggttcgtagtttatgaatgtatgacccttcacacaatatatcctcattccctacacattatgaagtttagctacataaat |
208 |
Q |
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| T |
49412634 |
tgaagtaaggaaaagttagtggttcgtagtttatgaatgtatgacccttcacacaatatatcctcattccctacacattatgaagtttagctacataaat |
49412733 |
T |
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| Q |
209 |
ttgggggagaagatgaaattgtgaaaaaccatatagttgaagaagaatattctagg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49412734 |
ttgggggagaagatgaaattgtgaaaaaccatatagttgaagaagaaaattctagg |
49412789 |
T |
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