View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1870_high_18 (Length: 249)

Name: NF1870_high_18
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1870_high_18
NF1870_high_18
[»] chr4 (4 HSPs)
chr4 (19-234)||(7394690-7394906)
chr4 (28-234)||(24605067-24605273)
chr4 (177-229)||(26703309-26703361)
chr4 (155-234)||(37176859-37176939)
[»] chr8 (6 HSPs)
chr8 (23-234)||(587401-587612)
chr8 (23-234)||(626310-626521)
chr8 (161-234)||(12820709-12820783)
chr8 (155-234)||(5828249-5828329)
chr8 (159-234)||(41778805-41778880)
chr8 (182-236)||(13097156-13097210)
[»] chr3 (4 HSPs)
chr3 (21-238)||(36036770-36036988)
chr3 (177-236)||(9155050-9155109)
chr3 (177-236)||(9158232-9158291)
chr3 (155-234)||(18551888-18551968)
[»] chr6 (14 HSPs)
chr6 (33-186)||(16731443-16731597)
chr6 (21-232)||(20189251-20189462)
chr6 (21-232)||(22146529-22146740)
chr6 (19-234)||(9313605-9313820)
chr6 (19-236)||(28117923-28118134)
chr6 (155-234)||(12980556-12980636)
chr6 (155-236)||(12983441-12983523)
chr6 (155-234)||(12747031-12747111)
chr6 (155-234)||(28894297-28894377)
chr6 (155-236)||(15578732-15578814)
chr6 (183-235)||(2773223-2773275)
chr6 (205-236)||(16731599-16731630)
chr6 (182-236)||(11183897-11183951)
chr6 (182-236)||(16883806-16883860)
[»] chr2 (2 HSPs)
chr2 (19-236)||(30719858-30720076)
chr2 (87-222)||(13572118-13572254)
[»] chr5 (4 HSPs)
chr5 (30-233)||(17944715-17944919)
chr5 (160-230)||(9690989-9691060)
chr5 (177-236)||(33320739-33320798)
chr5 (155-236)||(35432299-35432381)
[»] chr7 (8 HSPs)
chr7 (19-236)||(22083260-22083478)
chr7 (155-233)||(17152177-17152256)
chr7 (19-79)||(6214350-6214410)
chr7 (159-202)||(5742-5785)
chr7 (81-175)||(6214180-6214275)
chr7 (155-230)||(16547225-16547301)
chr7 (155-230)||(16618361-16618437)
chr7 (182-236)||(23313321-23313375)
[»] scaffold0134 (1 HSPs)
scaffold0134 (28-234)||(7329-7536)
[»] chr1 (8 HSPs)
chr1 (155-236)||(49148000-49148082)
chr1 (155-232)||(3087568-3087648)
chr1 (182-236)||(22448010-22448064)
chr1 (182-236)||(22453244-22453298)
chr1 (182-236)||(22456554-22456608)
chr1 (159-236)||(34066452-34066529)
chr1 (182-234)||(8435366-8435418)
chr1 (154-195)||(21153358-21153399)
[»] scaffold0043 (2 HSPs)
scaffold0043 (155-236)||(13814-13896)
scaffold0043 (155-236)||(11471-11553)
[»] scaffold0045 (1 HSPs)
scaffold0045 (155-234)||(90360-90440)
[»] scaffold0083 (1 HSPs)
scaffold0083 (155-236)||(42823-42905)
[»] scaffold0401 (1 HSPs)
scaffold0401 (155-236)||(4481-4563)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 7394906 - 7394690
Alignment:
Q  19 aggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaacca 118  Q
    |||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7394906 aggctgaaattacattgagaacatagagaatctagctaccaaagtgaccaatagaggattcaaaagctgaatcatctgtttttcatataatctccaacca 7394807  T
Q  119 ttttttatttacttgcaatttattattttcagc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagt 217  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7394806 ttttttatttacttgcaatttattatttttatcatttaatccaactgcctagggcaaccataattttaacacatccttaattttaatgtctttgctgagt 7394707  T
Q  218 agaaattgaaacagtcc 234  Q
    |||||||||||||||||    
T  7394706 agaaattgaaacagtcc 7394690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 234
Target Start/End: Complemental strand, 24605273 - 24605067
Alignment:
Q  28 ttacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatc-tccaaccattttttat 126  Q
    ||||||||||||| |||||||  | ||||||| || |||||||||||||||  ||||| |||||||||||||| ||||||||| ||||||||   |||||    
T  24605273 ttacattgagaacttagagaatttagctaccatagagaccaatagaggattagaaagcataatcatctgttttccatataatcttccaacca--gtttat 24605176  T
Q  127 ttacttgcaatttatta-ttttcagc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaatt 224  Q
    || |||||||||||||| ||||| ||  | ||  |||||||||| |||| || | | ||||| |||||||| |||||||||| |||||  ||||||||||    
T  24605175 tttcttgcaatttattatttttctgcaatcaactcaactgccta-ggcaccattgaatttaatacatcctttattttaacgtttttgccaagtagaaatt 24605077  T
Q  225 gaaacagtcc 234  Q
    ||||||||||    
T  24605076 gaaacagtcc 24605067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 26703361 - 26703309
Alignment:
Q  177 ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaac 229  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  26703361 ataattttaacacatccttaattttaacgtccttgccaagtagaaattgaaac 26703309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 37176859 - 37176939
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    |||||||||| ||||||||||  |||| ||||| |||||||| ||||||| |  ||||| |||||||||||||||||||||    
T  37176859 aatccaactgtctagggcaacccataaatttaatacatcctttattttaaagcttttgccgagtagaaattgaaacagtcc 37176939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 587401 - 587612
Alignment:
Q  23 tgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccatttt 122  Q
    |||||||||||||||||||||||||| || || |||| ||  || |||||||||||| ||||||| |||||||||||| || ||||| |||||||| |||    
T  587401 tgaaattacattgagaacatagagaatctagcaaccatagatacgaatagaggattcgaaagcttgatcatctgttttccacataatttccaaccagttt 587500  T
Q  123 ttatttacttgcaatttattattttcagct-ttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaa 221  Q
    | ||||||||||||||||||||||| |||  ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||  ||||||||    
T  587501 t-atttacttgcaatttattatttttagcacttaatccaactgcctagggtaaccataattttaacacatccttagttttaacgtctttgtcgagtagaa 587599  T
Q  222 attgaaacagtcc 234  Q
    |||||||||||||    
T  587600 attgaaacagtcc 587612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 626521 - 626310
Alignment:
Q  23 tgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccatttt 122  Q
    |||||||||||||||||||||||||| || || |||| ||  || |||||||||||| ||||||| |||||||||||| || ||||| |||||||| |||    
T  626521 tgaaattacattgagaacatagagaatctagcaaccatagatacgaatagaggattcgaaagcttgatcatctgttttccacataatttccaaccagttt 626422  T
Q  123 ttatttacttgcaatttattattttcagct-ttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaa 221  Q
    | ||||||||||||||||||||||| |||  ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||  ||||||||    
T  626421 t-atttacttgcaatttattatttttagcacttaatccaactgcctagggtaaccataattttaacacatccttagttttaacgtctatgacgagtagaa 626323  T
Q  222 attgaaacagtcc 234  Q
    |||||||||||||    
T  626322 attgaaacagtcc 626310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 12820783 - 12820709
Alignment:
Q  161 actgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    |||||||||||||||  ||||  ||||||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  12820783 actgcctagggcaacccataaacttaacacatcctttattttaacatctttgccgagtagaaattgaaacagtcc 12820709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 5828249 - 5828329
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    |||||||||||||||||||||  |||| |||||  ||||||| |||||||||  ||||  |||||||||||||||||||||    
T  5828249 aatccaactgcctagggcaacccataaatttaatgcatcctttattttaacgcttttgacgagtagaaattgaaacagtcc 5828329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 41778880 - 41778805
Alignment:
Q  159 caactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    ||||||||||||||| |  | | ||||| ||||| || |||||||||| ||||| |||||||||||||||||||||    
T  41778880 caactgcctagggcacccttgaatttaatacatcttttattttaacgtttttgccgagtagaaattgaaacagtcc 41778805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 13097156 - 13097210
Alignment:
Q  182 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||| |||||||| |||||||||| ||||| ||||||||||||||| |||||||    
T  13097156 tttaatacatcctttattttaacgtttttgccgagtagaaattgaaatagtccct 13097210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 36036988 - 36036770
Alignment:
Q  21 gctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccatt 120  Q
    ||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||      
T  36036988 gctgagattacattgagaacatagagaatctagctaccacagagaccaatagaggattcaaaagcttaatcacctgttttccatataatttccaacca-g 36036890  T
Q  121 ttttatttacttgcaatttattattttcagc-tttaatccaactgcctagggcaa-caataattttaacacatccttaattttaacgtctttgctgagta 218  Q
    ||||||||||||||||||||||||||| |||  | |||||||||||||||||||| || | | ||||| ||||  || |||||||||  |||| ||| ||    
T  36036889 ttttatttacttgcaatttattatttttagcactaaatccaactgcctagggcaaccattgaatttaatacataatttattttaacgcttttgttgaata 36036790  T
Q  219 gaaattgaaacagtccctat 238  Q
    ||||||||||||||||||||    
T  36036789 gaaattgaaacagtccctat 36036770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 9155050 - 9155109
Alignment:
Q  177 ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    |||| ||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  9155050 ataaatttaatacatccttgattttaacgtttttgccgagtagaaattgaaacagtccct 9155109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 9158232 - 9158291
Alignment:
Q  177 ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    |||| ||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  9158232 ataaatttaatacatccttgattttaacgtttttgccgagtagaaattgaaacagtccct 9158291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 18551888 - 18551968
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    |||| |||||||||| |||||  |||| |||||||||||||||||||||| ||||||||   ||||||||| |||||||||    
T  18551888 aatctaactgcctagagcaacccataaatttaacacatccttaattttaatgtctttgccttgtagaaattaaaacagtcc 18551968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 16731443 - 16731597
Alignment:
Q  33 ttgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccattttttatttactt 132  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16731443 ttgagaacctagagaatctagctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaacaattttttatttactt 16731542  T
Q  133 gcaatttattattttcagc-tttaatccaactgcctagggcaacaataattttaa 186  Q
    |||||||||||||||  || |||||| |||| |||||||||||| |||| |||||    
T  16731543 gcaatttattatttttcgcatttaatacaacagcctagggcaaccataactttaa 16731597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 20189462 - 20189251
Alignment:
Q  21 gctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccatt 120  Q
    |||||||||||||| ||||||||||||| || |||||||||| |||||||||||||||| ||  ||||||||||| |||| |||||||| ||||||||      
T  20189462 gctgaaattacatttagaacatagagaatctagctaccacagagaccaatagaggattcgaatacttaatcatctattttccatataatttccaacca-g 20189364  T
Q  121 ttttatttacttgcaatttattattttcagc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtag 219  Q
    ||||||||||||||||||||||||||| |||  |||| ||||||| |||||| ||| | ||||||||||||||||| ||||||||   ||||  |||||     
T  20189363 ttttatttacttgcaatttattatttttagcacttaacccaactgtctagggaaaccacaattttaacacatcctttattttaactcttttgtggagtat 20189264  T
Q  220 aaattgaaacagt 232  Q
    |||||||||||||    
T  20189263 aaattgaaacagt 20189251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 22146529 - 22146740
Alignment:
Q  21 gctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatctccaaccatt 120  Q
    |||||||||||||| ||||||||||||| || |||||||||| |||||||||||||||| ||  ||||||||||| |||| |||||||| ||||||||      
T  22146529 gctgaaattacatttagaacatagagaatctagctaccacagagaccaatagaggattcgaatacttaatcatctattttccatataatttccaacca-g 22146627  T
Q  121 ttttatttacttgcaatttattattttcagc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtag 219  Q
    ||||||||||||||||||||||||||| |||  |||| ||||||| |||||| ||| | ||||||||||||||||| ||||||||   ||||  |||||     
T  22146628 ttttatttacttgcaatttattatttttagcacttaacccaactgtctagggaaaccacaattttaacacatcctttattttaactcttttgtggagtat 22146727  T
Q  220 aaattgaaacagt 232  Q
    |||||||||||||    
T  22146728 aaattgaaacagt 22146740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 9313820 - 9313605
Alignment:
Q  19 aggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatc-tccaacc 117  Q
    |||||||| ||||||||||||  |||||||  | |||||||||| |||||||||||||||| ||||||||||||| |||||| ||||| ||| |||||||    
T  9313820 aggctgaatttacattgagaatttagagaatttagctaccacagagaccaatagaggattcgaaagcttaatcatatgttttccatattatcttccaacc 9313721  T
Q  118 attttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctga 215  Q
    |   |||||||||||||||||||||||||| | ||  | ||  ||||||||||||||  || | | ||||| | |||||| |||||||||  ||||||||    
T  9313720 a--atttatttacttgcaatttattatttttatgcaatcaactcaactgcctagggc-ccattgaatttaatatatcctttattttaacgcttttgctga 9313624  T
Q  216 gtagaaattgaaacagtcc 234  Q
    |||||||||||||||||||    
T  9313623 gtagaaattgaaacagtcc 9313605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 28117923 - 28118134
Alignment:
Q  19 aggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatct-ccaacc 117  Q
    |||||||| ||||||||||||| |||||||  | |||||||||| |||||||       || |||||||||||||||||||| ||||| |||| ||||||    
T  28117923 aggctgaatttacattgagaacttagagaatttagctaccacagagaccaat-------tcgaaagcttaatcatctgttttccatattatcttccaacc 28118015  T
Q  118 attttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctga 215  Q
    | |||  ||||||||||||||||||||||| | ||  | ||  ||||||||||||||| || | | ||||| | |||||| |||||||||  ||||| ||    
T  28118016 agttt--atttacttgcaatttattatttttatgcaatcaactcaactgcctagggcaccattgaatttaatatatcctttattttaacgcttttgccga 28118113  T
Q  216 gtagaaattgaaacagtccct 236  Q
    |||||||||||||||||||||    
T  28118114 gtagaaattgaaacagtccct 28118134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 12980636 - 12980556
Alignment:
Q  155 aatccaactgcctagggcaacaata-attttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    |||||||||||||||||||||  || | ||||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  12980636 aatccaactgcctagggcaactttagaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtcc 12980556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 12983523 - 12983441
Alignment:
Q  155 aatccaactgcctagggcaacaata-attttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    |||||||||||||||||||||| |  | ||||| |||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  12983523 aatccaactgcctagggcaacatttgaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagcccct 12983441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 12747031 - 12747111
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    |||||||||||||||||||||  |||| ||||| |||||||| |||||||||  ||||| |||||||||||||||||||||    
T  12747031 aatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtcc 12747111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 28894377 - 28894297
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    |||| ||||||||||||||||  |||| ||||| |||||||| |||||||||| ||||| |||||||||||||||||||||    
T  28894377 aatctaactgcctagggcaacccataaatttaatacatcctttattttaacgtttttgccgagtagaaattgaaacagtcc 28894297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 15578814 - 15578732
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    |||||||||||||||||||||  |||| ||||| |||||||| |||||||||  ||||| ||||||||||||||| |||||||    
T  15578814 aatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaatagtccct 15578732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 2773275 - 2773223
Alignment:
Q  183 ttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccc 235  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||    
T  2773275 ttaacacatcctttattttaacatctttgccgagtagaaattgaaacaatccc 2773223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 16731599 - 16731630
Alignment:
Q  205 gtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||||||||||||||||||||||||||||||    
T  16731599 gtctttgctgagtagaaattgaaacagtccct 16731630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 11183951 - 11183897
Alignment:
Q  182 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||| |||||||| |||||||||| ||| |  ||||||||||||||||||||||    
T  11183951 tttaatacatcctttattttaacgttttttccaagtagaaattgaaacagtccct 11183897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 16883806 - 16883860
Alignment:
Q  182 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||| |||||||| |||||||||  ||| | |||||||||||||||||||||||    
T  16883806 tttaatacatcctttattttaacgcttttaccgagtagaaattgaaacagtccct 16883860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 30719858 - 30720076
Alignment:
Q  19 aggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatc-tccaacc 117  Q
    |||||||| ||||||||||||| |||||||  | |||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||    
T  30719858 aggctgaatttacattgagaacttagagaatttagctaccacagagaccaatagaggattcgaaagcttaatcatctgttttccatattatcttccaacc 30719957  T
Q  118 attttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctga 215  Q
    |   ||||||||||| |||||||||||||| | ||  | ||  |||||||||| |||| || | | ||||| | |||||| |||||||||  ||||| ||    
T  30719958 a--gtttatttactttcaatttattatttttatgcaatcaactcaactgcctaaggcaccattgaatttaatatatcctttattttaacgcttttgccga 30720055  T
Q  216 gtagaaattgaaacagtccct 236  Q
    |||||||||||||||| ||||    
T  30720056 gtagaaattgaaacagcccct 30720076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 13572254 - 13572118
Alignment:
Q  87 taatcatctgtttttcatataatctccaaccattttttatttacttgcaatttattattttcagc-tttaatccaactgcctagggcaa-caataatttt 184  Q
    ||||||||| |||| || ||||| |||||||| |||| ||||||||||||||||||||||| |||   |||||||||||||||| |||| | |||| ||     
T  13572254 taatcatctcttttccacataatttccaaccagtttt-atttacttgcaatttattatttttagcacctaatccaactgcctagtgcaacccataaattc 13572156  T
Q  185 aacacatccttaattttaacgtctttgctgagtagaaa 222  Q
    |  |||||||| |||||||||  |||||| ||||||||    
T  13572155 actacatcctttattttaacgaatttgctaagtagaaa 13572118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 17944715 - 17944919
Alignment:
Q  30 acattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatc-tccaaccattttttattt 128  Q
    ||||||||||| |||||||  | |||||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||  |  |||||||    
T  17944715 acattgagaacttagagaatttagctaccacagagaccaatagaggattcgaaagcttaatcatctgttttccatattatcttccaac--tagtttattt 17944812  T
Q  129 acttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattga 226  Q
    ||||||||||||||||||| | ||  | ||  ||||||||||||||| || | | ||||| | |||||| ||||||| |  ||||| |||||||||||||    
T  17944813 acttgcaatttattatttttatgcaatcaactcaactgcctagggcaccattgaatttaatatatcctttattttaatgcttttgccgagtagaaattga 17944912  T
Q  227 aacagtc 233  Q
    |||||||    
T  17944913 aacagtc 17944919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 9690989 - 9691060
Alignment:
Q  160 aactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaaca 230  Q
    ||||||||||||||||  |||| ||||| |||||||| |||||||||  ||||| |||||||||||||||||    
T  9690989 aactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaaca 9691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 33320798 - 33320739
Alignment:
Q  177 ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    |||| ||||| |||||||| |||||||||  ||||| |||||||||||||| ||||||||    
T  33320798 ataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaagcagtccct 33320739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 35432381 - 35432299
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||||| |||||||||||||  |||| ||||| ||||| || |||||||||  ||||  ||||| |||||||||||||||||    
T  35432381 aatccaattgcctagggcaacccataaatttaatacatcatttattttaacgcttttgtcgagtaaaaattgaaacagtccct 35432299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 22083478 - 22083260
Alignment:
Q  19 aggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatc-tccaacc 117  Q
    |||||||| ||||||||||||| |||||||  |  ||||||||| || ||||||||||||| ||||||||||||| |||||| ||||| ||| | |||||    
T  22083478 aggctgaatttacattgagaacttagagaatttatctaccacagagatcaatagaggattcgaaagcttaatcatttgttttccatattatctttcaacc 22083379  T
Q  118 attttttatttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctga 215  Q
    |   |||||||||||||||||||||||||| | ||  | ||  ||||||||||||||| || | | ||||| | |||||| ||||||| |  ||||| ||    
T  22083378 a--gtttatttacttgcaatttattatttttatgcaatcaactcaactgcctagggcaccattgaatttaatatatcctttattttaatgcttttgccga 22083281  T
Q  216 gtagaaattgaaacagtccct 236  Q
    |||||||||||||||||||||    
T  22083280 gtagaaattgaaacagtccct 22083260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 17152177 - 17152256
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtc 233  Q
    |||||||||||||||||||||  |||| ||||| |||||||| |||||||||  ||||| ||||||||||||||||||||    
T  17152177 aatccaactgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtc 17152256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 6214410 - 6214350
Alignment:
Q  19 aggctgaaattacattgagaacatagagaacctggctaccacagtgaccaatagaggattc 79  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||  ||||||||    
T  6214410 aggctgaaattacattgagaacatagagaatctagctaccacggtgaccaaaggaggattc 6214350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 5742 - 5785
Alignment:
Q  159 caactgcctagggcaacaataattttaacacatccttaatttta 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  5742 caactgcctagggcaaccataattttaacacatccttaatttta 5785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 6214275 - 6214180
Alignment:
Q  81 aaagcttaatcatctgtttttcatataatctccaaccattttttatttacttgcaatttattattttcagc-tttaatccaactgcctagggcaac 175  Q
    |||||||||||||||||||| ||| |||| |||||||| |||   ||||||||||||||| |||||| ||| ||||| || ||||| |||||||||    
T  6214275 aaagcttaatcatctgttttccatttaatttccaaccagtttaattttacttgcaatttactatttttagcatttaaccccactgcttagggcaac 6214180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 16547225 - 16547301
Alignment:
Q  155 aatccaactgcctagggcaacaat-aattttaacacatccttaattttaacgtctttgctgagtagaaattgaaaca 230  Q
    |||||||||||||||||||||  | || ||||| |||||||| |||||||||  ||||| |||||||||||||||||    
T  16547225 aatccaactgcctagggcaacccttaaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaaca 16547301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 16618437 - 16618361
Alignment:
Q  155 aatccaactgcctagggcaacaat-aattttaacacatccttaattttaacgtctttgctgagtagaaattgaaaca 230  Q
    |||||||||||||||||||||  | || ||||| |||||||| |||||||||  ||||| |||||||||||||||||    
T  16618437 aatccaactgcctagggcaacccttaaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaaca 16618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 23313375 - 23313321
Alignment:
Q  182 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||| |||||||| |||||||||  | ||| |||||||||||||||||||||||    
T  23313375 tttaatacatcctttattttaacgcttatgccgagtagaaattgaaacagtccct 23313321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 7329 - 7536
Alignment:
Q  28 ttacattgagaacatagagaacctggctaccacagtgaccaatagaggattcaaaagcttaatcatctgtttttcatataatc-tccaaccattttttat 126  Q
    ||||||||||||| |||| ||  | |||||||||| ||| |||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||   |||||    
T  7329 ttacattgagaacttagataatttagctaccacagagactaatagaggattcgaaagtttaatcatctgttttccatattatcttccaacca--gtttat 7426  T
Q  127 ttacttgcaatttattattttca-gc-tttaatccaactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaatt 224  Q
    ||||||||||||||||||||| | ||  | ||  ||||||||||||||| || | | ||||| | |||||| |||||||||  ||| | |||||||||||    
T  7427 ttacttgcaatttattatttttatgcaatcaactcaactgcctagggcaccattgaatttaatatatcctttattttaacgctttttccgagtagaaatt 7526  T
Q  225 gaaacagtcc 234  Q
    ||||||||||    
T  7527 gaaacagtcc 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 49148000 - 49148082
Alignment:
Q  155 aatccaactgcctagggcaacaata-attttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    |||||||||||||||||||||  |  | ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  49148000 aatccaactgcctagggcaacttttgaatttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccct 49148082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 3087648 - 3087568
Alignment:
Q  155 aatccaactgcctagggcaacaa--taattttaacacatccttaatttt-aacgtctttgctgagtagaaattgaaacagt 232  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||    
T  3087648 aatccaattgcctagggcaacaccgtaattttaacacatccttaattttaaacgtctttgctaagtagaaattaaaacagt 3087568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 22448064 - 22448010
Alignment:
Q  182 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22448064 tttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccct 22448010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 22453298 - 22453244
Alignment:
Q  182 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22453298 tttaatacatcctttattttaacgtttttgctgagtagaaattgaaacagtccct 22453244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 22456608 - 22456554
Alignment:
Q  182 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  22456608 tttaatacatcctttattttatcgtttttgctgagtagaaattgaaacagtccct 22456554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 34066452 - 34066529
Alignment:
Q  159 caactgcctagggcaacaataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||||||||||||| |  | | ||||| |||||||| ||||||| || ||| | |||||||||||||||||||||||    
T  34066452 caactgcctagggcacccttgaatttaatacatcctttattttaaagttttttccgagtagaaattgaaacagtccct 34066529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 8435366 - 8435418
Alignment:
Q  182 tttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    ||||| |||||||| |||||||||  ||||| |||||||||||||||||||||    
T  8435366 tttaatacatcctttattttaacgcttttgcagagtagaaattgaaacagtcc 8435418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 21153358 - 21153399
Alignment:
Q  154 taatccaactgcctagggcaacaataattttaacacatcctt 195  Q
    |||||||||||||||||||||| |||| ||||| ||||||||    
T  21153358 taatccaactgcctagggcaaccataaatttaatacatcctt 21153399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 13814 - 13896
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    |||||||||||||||||||||  || | ||||| |||||||| |||||||||  ||||| |||||||||||||||||||||||    
T  13814 aatccaactgcctagggcaacccatcaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtccct 13896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 11471 - 11553
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||||||||||||||| |||  |||| ||||| |||||||| |||||||||  ||||| ||||| |||||||||||||||||    
T  11471 aatccaactgcctagggaaacccataaatttaatacatcctttattttaacgcttttgccgagtataaattgaaacagtccct 11553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 90440 - 90360
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtcc 234  Q
    ||||||| |||||||||||||  |||| ||||| |||||||| |||||||||  ||||| |||||||||||||||||||||    
T  90440 aatccaattgcctagggcaacccataaatttaatacatcctttattttaacgcttttgccgagtagaaattgaaacagtcc 90360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 42823 - 42905
Alignment:
Q  155 aatccaactgcctagggcaa-caataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||||| ||||||||| || | |||| ||||| |||||||| |||||||||| ||||| |||||||| ||||||||||||||    
T  42823 aatccaaatgcctagggaaatccataaatttaatacatcctttattttaacgtttttgccgagtagaagttgaaacagtccct 42905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 4481 - 4563
Alignment:
Q  155 aatccaactgcctagggcaaca-ataattttaacacatccttaattttaacgtctttgctgagtagaaattgaaacagtccct 236  Q
    ||||||| | |||||||||||  |||| ||||| |||||||| |||||||||  ||| | ||||||||||||| |||||||||    
T  4481 aatccaatttcctagggcaacccataaatttaatacatcctttattttaacgctttttccgagtagaaattgatacagtccct 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University