View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_high_27 (Length: 221)
Name: NF1870_high_27
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 47674094 - 47674295
Alignment:
| Q |
1 |
atgcagaaaatagaaaatgatgctggactatatttcattttatacggattatcctctaatattaaaaggtttagtcctacttgctccattccaaattagc |
100 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
47674094 |
atgcagaaaatagaaaatgatgctggaatatagttcattttatacggattatac-------------ggattagtcctacttgctccattccaaattagc |
47674180 |
T |
|
| Q |
101 |
agttgtttaagattgctatgcaaatattaagaaaaataataataaatttgctaatggacatggtagttttactaaattaaccctattcgttaataaatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47674181 |
agttgtttaagattgctatgcaaatattaagaaaagtaataataaatttgctaatggacatggtagttttactaaattaaccctattcgttaataaatgc |
47674280 |
T |
|
| Q |
201 |
atgcttgatgatgtc |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
47674281 |
atgcttgatgatgtc |
47674295 |
T |
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