View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1870_high_28 (Length: 218)

Name: NF1870_high_28
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1870_high_28
NF1870_high_28
[»] chr5 (4 HSPs)
chr5 (14-203)||(32663763-32663953)
chr5 (14-110)||(32658663-32658761)
chr5 (136-199)||(28629900-28629964)
chr5 (111-200)||(8103672-8103761)
[»] chr8 (9 HSPs)
chr8 (115-200)||(44222526-44222611)
chr8 (144-203)||(34741754-34741813)
chr8 (110-180)||(11923010-11923080)
chr8 (133-200)||(5573306-5573374)
chr8 (115-200)||(26682068-26682154)
chr8 (114-183)||(7750667-7750736)
chr8 (116-198)||(40568314-40568398)
chr8 (144-201)||(44091348-44091405)
chr8 (136-176)||(11947016-11947056)
[»] chr7 (3 HSPs)
chr7 (138-203)||(3530203-3530268)
chr7 (144-200)||(42750318-42750374)
chr7 (136-200)||(7170024-7170088)
[»] chr3 (3 HSPs)
chr3 (146-200)||(40330382-40330436)
chr3 (147-202)||(38786413-38786468)
chr3 (131-200)||(53794780-53794850)
[»] chr2 (3 HSPs)
chr2 (110-200)||(34817539-34817629)
chr2 (111-181)||(14377421-14377491)
chr2 (136-200)||(22593318-22593382)
[»] chr1 (4 HSPs)
chr1 (110-200)||(41624825-41624915)
chr1 (144-200)||(23378597-23378653)
chr1 (144-201)||(43317519-43317576)
chr1 (136-200)||(6754493-6754557)
[»] chr4 (2 HSPs)
chr4 (111-200)||(2096867-2096957)
chr4 (113-181)||(7349687-7349755)
[»] scaffold0618 (1 HSPs)
scaffold0618 (144-201)||(8505-8562)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 32663953 - 32663763
Alignment:
Q  14 atgaaaactctactctcaacaatgcagttcaagcttatgatttcgcatattcatagacttaaacgtcaaccaaagtaaagagaggaaatatttttctatg 113  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32663953 atgaaaactccactctcaacaatgtagttcaagcttatgatttcgcatattcatagacttaaacgtaaaccaaagtaaagagaggaaatatttttctatg 32663854  T
Q  114 ggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataa-taactttttattgaaaacaacaatcatctattaaaaaatt 203  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32663853 ggtttgtctcacacatgtaatgctgcacacgttaaaacaaataaaaataattaactttttattgaaaacaacaatcatctattaaaaaatt 32663763  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 32658761 - 32658663
Alignment:
Q  14 atgaaaactc--tactctcaacaatgcagttcaagcttatgatttcgcatattcatagactta-aacgtcaaccaaagtaaagagaggaaatatttttct 110  Q
    ||||||||||  |||||||| | ||| |||||||| ||||||||| |||||||  |||||||| || || ||||||||||||||||||||||||||||||    
T  32658761 atgaaaactccttactctcatctatggagttcaagattatgatttggcatattg-tagacttataatgtaaaccaaagtaaagagaggaaatatttttct 32658663  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 28629900 - 28629964
Alignment:
Q  136 ttgcacacgttaaaacaaataaaaataataactttttattgaaaa-caacaatcatctattaaaa 199  Q
    ||||||| |||||| ||| ||||||||||||||||| |||||||| ||||||| || ||||||||    
T  28629900 ttgcacatgttaaagcaactaaaaataataacttttcattgaaaaccaacaattatttattaaaa 28629964  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 8103761 - 8103672
Alignment:
Q  111 atgggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    ||||| |||||| |||  || ||| ||||||| |||||  ||| |||||||| |||||||||||||||| ||||||| |  |||||||||    
T  8103761 atgggattgtctaacatgtgcaatattgcacatgttaaggcaactaaaaatagtaactttttattgaaaccaacaattaattattaaaaa 8103672  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 44222611 - 44222526
Alignment:
Q  115 gtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    |||||||| ||| ||||||| ||||||| |||||| ||| ||||| ||| | ||||||||| ||||||||||| || |||||||||    
T  44222611 gtttgtctaacatatgtaatattgcacatgttaaagcaactaaaactaacatctttttattaaaaacaacaattatttattaaaaa 44222526  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 34741813 - 34741754
Alignment:
Q  144 gttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaaatt 203  Q
    |||||||||| ||||||||| ||||||| ||||||||||| ||| || ||||||||||||    
T  34741813 gttaaaacaactaaaaataacaacttttaattgaaaacaataattatttattaaaaaatt 34741754  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 11923010 - 11923080
Alignment:
Q  110 tatgggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattgaaaa 180  Q
    ||||||||||||| |||  || ||| ||||||| |||||||||| | ||||| ||||||||||||||||||    
T  11923010 tatgggtttgtctaacatgtgcaatattgcacaagttaaaacaactgaaaatgataactttttattgaaaa 11923080  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 5573306 - 5573374
Alignment:
Q  133 atgttgcacacgttaaaacaaataaaaataataactttttattg-aaaacaacaatcatctattaaaaa 200  Q
    ||||| |||| ||||||| || ||||||||| || ||||||||| |||||||||||||| |||||||||    
T  5573306 atgttacacatgttaaaataactaaaaataacaagtttttattgaaaaacaacaatcatttattaaaaa 5573374  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 26682068 - 26682154
Alignment:
Q  115 gtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttt-tattgaaaacaacaatcatctattaaaaa 200  Q
    |||||||| |||  || ||| ||||||| |||||||||| ||||| || ||| |||| |||||||||||||||| || |||||||||    
T  26682068 gtttgtctaacatgtgcaatattgcacatgttaaaacaactaaaagtagtaatttttttattgaaaacaacaattatttattaaaaa 26682154  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 7750667 - 7750736
Alignment:
Q  114 ggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattgaaaacaa 183  Q
    ||||||||| |||  || ||| ||||||| |||||||||| ||||| ||  |||||||||||||||||||    
T  7750667 ggtttgtctaacatgtgcaatattgcacatgttaaaacaactaaaagtagcaactttttattgaaaacaa 7750736  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 40568314 - 40568398
Alignment:
Q  116 tttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttatt--gaaaacaacaatcatctattaaa 198  Q
    ||||||| ||||||| ||| || |||| |||||||||| ||||| |  ||||||||||||   |||||||||||||| |||||||    
T  40568314 tttgtctaacacatgcaatatttcacatgttaaaacaactaaaagttgtaactttttattaaaaaaacaacaatcatttattaaa 40568398  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 44091348 - 44091405
Alignment:
Q  144 gttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaaa 201  Q
    ||||||||||  |||| || ||| |||||||||||||||||||| || ||||||||||    
T  44091348 gttaaaacaacgaaaagtattaattttttattgaaaacaacaattatttattaaaaaa 44091405  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 11947056 - 11947016
Alignment:
Q  136 ttgcacacgttaaaacaaataaaaataataactttttattg 176  Q
    ||||||| |||||||||| ||||||| ||||||||||||||    
T  11947056 ttgcacaagttaaaacaactaaaaatgataactttttattg 11947016  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 3530268 - 3530203
Alignment:
Q  138 gcacacgttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaaatt 203  Q
    ||||| |||||| ||| ||| |||||||| |||||||||||||||||||| || ||||||||||||    
T  3530268 gcacatgttaaagcaattaagaataataattttttattgaaaacaacaattatttattaaaaaatt 3530203  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 42750318 - 42750374
Alignment:
Q  144 gttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||| || |||||||||    
T  42750318 gttaaagcaactaaaaataataactttttattgaaaacaataattatttattaaaaa 42750374  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 7170024 - 7170088
Alignment:
Q  136 ttgcacacgttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    ||||||| |||||  ||| |||||||| |||||||||||||||| ||||||| |  |||||||||    
T  7170024 ttgcacatgttaaggcaactaaaaatagtaactttttattgaaaccaacaattaattattaaaaa 7170088  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 40330436 - 40330382
Alignment:
Q  146 taaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    |||||||| |||||||| |||||||| ||||||||||||||| || |||||||||    
T  40330436 taaaacaattaaaaatagtaacttttaattgaaaacaacaataatttattaaaaa 40330382  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 38786468 - 38786413
Alignment:
Q  147 aaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaaat 202  Q
    ||||||| |||||||| ||| ||||||||||||| |||||| || |||||||||||    
T  38786468 aaaacaactaaaaatagtaattttttattgaaaataacaattatttattaaaaaat 38786413  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 53794780 - 53794850
Alignment:
Q  131 taatgttgcacacgttaaaacaaataaaaataataactttttattgaaaa-caacaatcatctattaaaaa 200  Q
    |||| ||||||| |||||| ||| |||||||||||||| |||||||||||  |||||| || |||||||||    
T  53794780 taatattgcacatgttaaaccaactaaaaataataactatttattgaaaagtaacaataatttattaaaaa 53794850  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 34817539 - 34817629
Alignment:
Q  110 tatgggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    ||||||||||||| ||| ||| ||| ||||||   |||||| || ||||||||  |||| |||||||||||||||||| || |||||||||    
T  34817539 tatgggtttgtctaacatatgcaatattgcacgtattaaaataactaaaaatatcaactatttattgaaaacaacaattatttattaaaaa 34817629  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 14377421 - 14377491
Alignment:
Q  111 atgggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattgaaaac 181  Q
    |||||||||||| |||| || ||| ||||||| |||||  ||| ||||| || ||||||||||||||||||    
T  14377421 atgggtttgtctaacacgtgcaatattgcacatgttaaggcaactaaaagtagtaactttttattgaaaac 14377491  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 22593382 - 22593318
Alignment:
Q  136 ttgcacacgttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    ||||| ||| |||||||| |||||||   |||||||||||||||||||||||  | |||||||||    
T  22593382 ttgcatacgctaaaacaattaaaaatggaaactttttattgaaaacaacaattgtttattaaaaa 22593318  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 41624825 - 41624915
Alignment:
Q  110 tatgggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    |||||| |||||| |||  || ||| ||||||| |||||| ||| |||||||| |||||||||||||||| ||||||| |  |||||||||    
T  41624825 tatgggattgtctaacatgtgcaatattgcacatgttaaagcaactaaaaatagtaactttttattgaaaccaacaattaattattaaaaa 41624915  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 23378653 - 23378597
Alignment:
Q  144 gttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    |||||||||| ||||| |||||||||||||||||||| |||||| || | |||||||    
T  23378653 gttaaaacaactaaaattaataactttttattgaaaataacaattatttgttaaaaa 23378597  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 43317519 - 43317576
Alignment:
Q  144 gttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaaa 201  Q
    |||||| ||| ||||| || ||||| ||| ||||||||||||||||| ||||||||||    
T  43317519 gttaaagcaactaaaagtagtaactattttttgaaaacaacaatcatttattaaaaaa 43317576  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 6754493 - 6754557
Alignment:
Q  136 ttgcacacgttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaa 200  Q
    ||||||| |||||  ||| |||||||| |||||||||||||||| ||||||| |  |||||||||    
T  6754493 ttgcacatgttaaggcaactaaaaatagtaactttttattgaaaccaacaattaattattaaaaa 6754557  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 2096867 - 2096957
Alignment:
Q  111 atgggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattg-aaaacaacaatcatctattaaaaa 200  Q
    |||||||||||| |||  || ||| ||||||| |||||| ||| ||||| | | |||||||||||| ||||||||||| || |||||||||    
T  2096867 atgggtttgtctaacatgtgcaatattgcacaagttaaatcaactaaaagtgacaactttttattgaaaaacaacaattatttattaaaaa 2096957  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 7349687 - 7349755
Alignment:
Q  113 gggtttgtctcacacatgtaatgttgcacacgttaaaacaaataaaaataataactttttattgaaaac 181  Q
    |||||||||| |||| || ||| ||||||| |||||  ||| ||||| ||||||||||| |||||||||    
T  7349687 gggtttgtctaacacgtgcaatattgcacatgttaaggcaactaaaagtaataacttttcattgaaaac 7349755  T

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Target: scaffold0618 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 8562 - 8505
Alignment:
Q  144 gttaaaacaaataaaaataataactttttattgaaaacaacaatcatctattaaaaaa 201  Q
    ||||||||||  |||| || ||| |||||||||||||||||||| || ||||||||||    
T  8562 gttaaaacaacgaaaagtattaattttttattgaaaacaacaattatttattaaaaaa 8505  T

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