View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_high_3 (Length: 458)
Name: NF1870_high_3
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 119 - 440
Target Start/End: Original strand, 34581613 - 34581930
Alignment:
| Q |
119 |
ggaactatgcttaaaatctacagtagaaacagagttagtgagtgcttaaggggcgtatataaaaatggaaaatcaaaacgaaagtaacaagggaaacgtt |
218 |
Q |
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| T |
34581613 |
ggaactatgcttaaaatctacagtagaaacagagttagtgagtgcttaaggggcgtatataaaaatggaaaatcaaaacgaaagtaacaagggaaacgtt |
34581712 |
T |
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| Q |
219 |
ataatggcaccagttgcaaaggtggcaatggtatctgaaaacagacaatgtgacaacattcatctgcttccgcaaaccaaaccatctccacagctagcta |
318 |
Q |
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| T |
34581713 |
ataatggcaccagttgcaaaggtggcaatggtatcggaaaacagataatgtgacaacatgcatctgcttccgcaaaccaaaccatctccac----agcta |
34581808 |
T |
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| Q |
319 |
gggttggcaccatctactccatgcaaaatattttaatttactcactgagctccggttttatagaccactgcatcacattttgtttccaacttagcgatgt |
418 |
Q |
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| T |
34581809 |
gggttggcaccatctactccatgcaaaatattttaatttactcaccgagctccggttttatagaccactgcatcacattttgtttccaacttagcgatgt |
34581908 |
T |
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| Q |
419 |
gggacattgtgcagtgtcgaat |
440 |
Q |
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| T |
34581909 |
gggacattgtgcagtgtcgaat |
34581930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 34581202 - 34581313
Alignment:
| Q |
8 |
aaaaaacatttacttttttatttcaaactgatcggtattcgcacttttattgttattgcatttgttcacaattaacatatttcacaaagatatgtcaaaa |
107 |
Q |
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| T |
34581202 |
aaaaaacatttacttttttatttcaaactgatcggtattcgcactgttattgttattgcatttgttcacaattaacatatttcacaaagatatgtcaaaa |
34581301 |
T |
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| Q |
108 |
atactttcttag |
119 |
Q |
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|||||||||||| |
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| T |
34581302 |
atactttcttag |
34581313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 34585570 - 34585603
Alignment:
| Q |
398 |
ttgtttccaacttagcgatgtgggacattgtgca |
431 |
Q |
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| T |
34585570 |
ttgtttccaacttagcgatgtgggacatggtgca |
34585603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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