View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_high_30 (Length: 210)
Name: NF1870_high_30
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 43540135 - 43540008
Alignment:
| Q |
18 |
aaaggatatttagacattacagacacagatggagtagaggaggtaagttctggtatttgatacaatgcatatttgtcggtcaacatccatttgatataat |
117 |
Q |
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| T |
43540135 |
aaaggatatttagacattacagacacagatggagtagaggaggtaagttctggtatttgatagtatgcatatttgtcagtcaacatccatttgatataat |
43540036 |
T |
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| Q |
118 |
gacgtattcatgggcacctttgtttgta |
145 |
Q |
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| T |
43540035 |
gacatattcatgggcacctttgtttgta |
43540008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 43539988 - 43539948
Alignment:
| Q |
156 |
gaaggtattatgtgtttgaagtgtccctacctaaatctgtg |
196 |
Q |
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| T |
43539988 |
gaaggtattatgtgtttgatgtgtccctacctaaatttgtg |
43539948 |
T |
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