View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_high_4 (Length: 456)
Name: NF1870_high_4
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 18599793 - 18600232
Alignment:
| Q |
1 |
ccacttatgatacaaaacacaaacaatgcaattctccttttaaacttgtctatgaagaaaaatgttaccaatgaagatggtatctcacttaaggcattaa |
100 |
Q |
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| T |
18599793 |
ccacttatgatacaaaacacaaacaatgcaattctccttttaaacttgtctatgaagaaaaatgtgaccaatgaagatggtatctcacttaaggcattaa |
18599892 |
T |
|
| Q |
101 |
aagtgacacttagataaagattaaaggacaagtttccaagccctagtggcataccataatagacaactccaattccaaaacctaatgccataatcaataa |
200 |
Q |
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| T |
18599893 |
aagtgacacttaggtaaagattaaaggacaagtttccaagccctagtggcataccataatagacaactccaattccaaaacctaatgccataatcaataa |
18599992 |
T |
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| Q |
201 |
tagtctccttgaggaccatttcttttgcaacaaaagtttgagggcataaaacaaatcaacatttaaattattttcttcctcatgtgaagacatgttgttg |
300 |
Q |
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| T |
18599993 |
tagtctccttgaggaccatttcttttgcaacaaaagtttgagggcataaaacaaatcaacatttaaattattttcttcctcatgtgaagacatgttgttg |
18600092 |
T |
|
| Q |
301 |
atggataaatttaggttactttgagtgattgaagtgatgtattttagtgtagctattgcttcttcnnnnnnncctttcaatagaagccatctaggtgatt |
400 |
Q |
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| T |
18600093 |
atggataaatttaggttactttgagtgattgaagtgatgtattttagtgtagctattgcttcttcttcttttcctttcaatagaagccatctaggtgatt |
18600192 |
T |
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| Q |
401 |
cttgaacgaaaattttcaccaacatgcaatagaaaattgt |
440 |
Q |
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| T |
18600193 |
cttgaacgaaaattttcaccaacatgcaatagaaaattgt |
18600232 |
T |
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