View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_high_8 (Length: 412)
Name: NF1870_high_8
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 249 - 395
Target Start/End: Original strand, 7883178 - 7883324
Alignment:
| Q |
249 |
taactaagaaattttaaatttgggtatgtaggtagctgtggcacacacaattgggcatgttgctgcaactgtgagtatgtccaaagtagcagtttcattc |
348 |
Q |
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| T |
7883178 |
taactaagaaatttcaaatttggttatgtaggtagctgtggcacacacaattgggcatgttgctgcaactgtgagtatgtccaaagtagcagtttcattc |
7883277 |
T |
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| Q |
349 |
actcacatcatcaagagtggagaaccagctttcagtgtgctagtatc |
395 |
Q |
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| T |
7883278 |
actcacatcatcaagagtggagaaccagctttcagtgtgctagtatc |
7883324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 7883048 - 7883173
Alignment:
| Q |
33 |
tttgagaaaagtgaaatatttgaatgtaacttcacgcattgatgtagtgtcaaacgcgactttgatgtgaaatgtcagtgtccgacataacatacataat |
132 |
Q |
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| T |
7883048 |
tttgagaaaaatgaaaattttgaatgtaacttctggcatcgatgtagtgtcggacgcaactttgacgtgaaatgtcagtgtccgacatgacatacatagt |
7883147 |
T |
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| Q |
133 |
tacattcagttactttcatttcttaa |
158 |
Q |
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| T |
7883148 |
tacattcagttagtttcatatcttaa |
7883173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 395
Target Start/End: Original strand, 54985644 - 54985761
Alignment:
| Q |
278 |
aggtagctgtggcacacacaattgggcatgttgctgcaactgtgagtatgtccaaagtagcagtttcattcactcacatcatcaagagtggagaaccagc |
377 |
Q |
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| T |
54985644 |
aggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaacctgc |
54985743 |
T |
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| Q |
378 |
tttcagtgtgctagtatc |
395 |
Q |
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| T |
54985744 |
tttcagtgttcttgtatc |
54985761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 386
Target Start/End: Original strand, 18395993 - 18396101
Alignment:
| Q |
278 |
aggtagctgtggcacacacaattgggcatgttgctgcaactgtgagtatgtccaaagtagcagtttcattcactcacatcatcaagagtggagaaccagc |
377 |
Q |
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|||| ||||| |||||||||||||| ||||| || || || || |||||||||||||| || || || || || || |||||||||||||| || || || |
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| T |
18395993 |
aggttgctgttgcacacacaattggacatgtcgcggctacggttagtatgtccaaagtggctgtgtcgtttacacatatcatcaagagtggcgagcctgc |
18396092 |
T |
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| Q |
378 |
tttcagtgt |
386 |
Q |
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||| ||||| |
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| T |
18396093 |
ttttagtgt |
18396101 |
T |
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