View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_low_1 (Length: 1165)
Name: NF1870_low_1
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 679; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 1 - 734
Target Start/End: Original strand, 49133130 - 49133863
Alignment:
| Q |
1 |
tggtggtcatcatgaaggaagaggcatgcctgagaatgttgatggtcgaattgcttgatttataagaatatgttatcctgtcgaagaaatagaacatgtt |
100 |
Q |
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| T |
49133130 |
tggtggtcatcatgaaggaaaaggcatgcctgagaatattgatggtcgaattgcttgatttataagaatatgttatcctgtcgaagaaatagaacatgtt |
49133229 |
T |
|
| Q |
101 |
ctgtaacattttatcattgttcttcaccagatttagctgtgtgtctatccattactttacttgatccaaagttggtgaacaattttcatcattgatgtct |
200 |
Q |
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| T |
49133230 |
ctgtaacattttatcattgttcttcaccagatttagctgtgtgtctatccattactttacttgatccaaagttggtgaacaattttcatcattgatgtgt |
49133329 |
T |
|
| Q |
201 |
gacgttatgtgtcaacagtattattgattatggaaactgatcttgacttttattgttcgtcgtggaaataatttgatcatcttattataactcagctatt |
300 |
Q |
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| T |
49133330 |
gacgttatgtgtcaacagtattattgattatggaaactgatcttgacttttattgttcgtcgtggaaataatttgatcatcttattataactcagctatt |
49133429 |
T |
|
| Q |
301 |
accttttgcatgtgaaggttataannnnnnnnnagttcatgggggttcgcttgggattctgtatttcttcttttcttggtcttgcctaccagttatgtta |
400 |
Q |
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| T |
49133430 |
accttttgcatgtgaaggttataatttttttttagttcatgggggttcgcttgggattctgtatttcttcttttcttggtcttgcctaccagttatgtta |
49133529 |
T |
|
| Q |
401 |
cagtagtaccacttgtatatagaaagatgcgttgatacttccaccacaaaaattaaagatgcatatatacattgctcaatcaatataggttattttgatc |
500 |
Q |
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| T |
49133530 |
cagtagtaccacttgtatatagaaagatgcgttgatacttccaccacaaaaattaaagatgcatatatacattgctcaatcaatataggttattttgatc |
49133629 |
T |
|
| Q |
501 |
agtcgattgatagtacttgcagcaagactatgagaagttattgtggatgtgtgaagcattgcttctaagaacgatttgagaaggtggagcggtaaacaag |
600 |
Q |
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| T |
49133630 |
agtcgattgatagtacttgcagcaagactatgagaagttattatggatgtgtgaagcattgcttctaagaacgatttgagaaggtggagcggtaaacaag |
49133729 |
T |
|
| Q |
601 |
ctccgaccaagggtggcattgggcgaggctttggcggatagacgtaggctgttgattaaaacgttgatggcaagagagtctgagaaagatggcacggagg |
700 |
Q |
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| T |
49133730 |
ctccgaccaagggtggcattgggcgaggctttggcagatagacttaggctgttgattaaaacgttgatggcaagagagtctgagaaagatggcacggagg |
49133829 |
T |
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| Q |
701 |
atatggtttgtgtggaggacatagatggtcttcg |
734 |
Q |
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| T |
49133830 |
atatggtttgtgtggaggacatagatgatcttcg |
49133863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 744 - 1149
Target Start/End: Original strand, 49133893 - 49134285
Alignment:
| Q |
744 |
actaaagatggtctaagccgtttagataatcgaataaccatgaaagaataattatcacatacagcatgcaaaatcatgcctttctttgtagcttagtgtg |
843 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49133893 |
actaaagatggtctaagccgtttagataatcgaataaccatgaaagaataattatcacatacagcatgcaaaatcatgcctttctttgtagcttagtgtg |
49133992 |
T |
|
| Q |
844 |
acttggtagtcaggcctttctttttatcttagtgtgacttagtaatacagtattactaatactggttcctannnnnnncaacggtgcttcttaaaattgc |
943 |
Q |
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| T |
49133993 |
acttggtagtcaggcctttctttttatcttagtgtgacttagtaatac--------------tggttcctatttttttcaacggtgcttcttaaaattgc |
49134078 |
T |
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| Q |
944 |
caacagttagcaatcaaatcagcaaaaacgaaaaagagctttgaaacaatcatttgcacaaaagaat-aaaaatgcattagaacacagttacttcatcag |
1042 |
Q |
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| T |
49134079 |
caacagttagcaatcaaatcagcaaaaacgaaaaagagctttgaaacaatcatttgcacaaaagaataaaaaatgccttagaacacagttacttcatcag |
49134178 |
T |
|
| Q |
1043 |
tttatggaagnnnnnnncgaagctaaaagagaagcaaagagagaaattaagaagtggggttgaggaaggaatgagataagaagcattgagctgctctcaa |
1142 |
Q |
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| T |
49134179 |
tttatggaagaaaaaaacgaagctaaaagagaagcaaagagagaaattaagaagtggggttgaggaaggaatgagataagaagcattgagctgctctcaa |
49134278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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