View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1870_low_10 (Length: 335)

Name: NF1870_low_10
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1870_low_10
NF1870_low_10
[»] chr6 (6 HSPs)
chr6 (9-305)||(16730972-16731277)
chr6 (1-292)||(20189637-20189939)
chr6 (1-292)||(22146052-22146354)
chr6 (124-237)||(28117508-28117621)
chr6 (124-237)||(9314122-9314235)
chr6 (124-237)||(22464083-22464196)
[»] chr4 (5 HSPs)
chr4 (61-321)||(7395120-7395379)
chr4 (23-230)||(24605442-24605656)
chr4 (221-300)||(2541363-2541442)
chr4 (219-322)||(22093476-22093579)
chr4 (31-83)||(24605386-24605438)
[»] chr3 (4 HSPs)
chr3 (1-235)||(36037168-36037411)
chr3 (221-288)||(2783736-2783803)
chr3 (211-299)||(35412227-35412312)
chr3 (221-299)||(18645112-18645187)
[»] chr7 (5 HSPs)
chr7 (1-145)||(26808936-26809088)
chr7 (221-321)||(26809173-26809273)
chr7 (124-222)||(22083779-22083878)
chr7 (56-148)||(6214516-6214616)
chr7 (150-219)||(6215034-6215104)
[»] chr8 (2 HSPs)
chr8 (1-94)||(587132-587225)
chr8 (1-94)||(626697-626790)
[»] chr5 (5 HSPs)
chr5 (35-145)||(35432716-35432834)
chr5 (221-288)||(28562796-28562863)
chr5 (221-288)||(28566364-28566431)
chr5 (221-299)||(42062548-42062623)
chr5 (124-237)||(17944318-17944432)
[»] chr2 (3 HSPs)
chr2 (221-289)||(11059410-11059478)
chr2 (221-288)||(13517919-13517986)
chr2 (124-237)||(30719445-30719558)
[»] scaffold0134 (1 HSPs)
scaffold0134 (124-237)||(6906-7019)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 305
Target Start/End: Complemental strand, 16731277 - 16730972
Alignment:
Q  9 attactatgtctgattcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaatggtcatacacatga 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||    
T  16731277 attactatgtccgattcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaattgatagaagctagtgttaatagtcatacacacga 16731178  T
Q  109 ta--------agcattaagcaagaataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagat 200  Q
    ||        ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||| ||||||||||    
T  16731177 tattaagaaaagcatcaagcaagaatagttatgaataaagactaaattatattgatagcaacaaagtcaaaaactacatagattcacagatacaatagat 16731078  T
Q  201 tcaccttg-cttaatcaaagaaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgttcctcaattct 299  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  16731077 tcaccttggcttaatcaaaggaaattagctagacatagagatacaaataaatagcatgaaaactaaaattaaccatgaaaacatgttgttcctcaattct 16730978  T
Q  300 ctctct 305  Q
    ||||||    
T  16730977 ctctct 16730972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 20189637 - 20189939
Alignment:
Q  1 taatcacgattactatgtctgattcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaatggtcat 100  Q
    ||||||| |||| ||| ||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  20189637 taatcacaattattatatccaattcaattgctagggtaagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagttagtgttaatagtcat 20189736  T
Q  101 acacatgata--------agcattaagcaagaataattatgaataaagactaaattgtattgatagcaaca--gagtcaaaagctacatggattcacagg 190  Q
    ||||| ||||        ||||||||| ||||||| ||||||||||| ||| |||| |||||||| ||| |  |||||||||| |   |||||| ||||     
T  20189737 acacacgatattaagaaaagcattaagtaagaatacttatgaataaatactgaattatattgataacaatatagagtcaaaagttgtgtggatttacaga 20189836  T
Q  191 tacaatagattcaccttg-cttaatcaaagaaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgtt 289  Q
    ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  20189837 tacaatagattcatcttggcttaatcaaaggaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgtt 20189936  T
Q  290 cct 292  Q
    |||    
T  20189937 cct 20189939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 22146354 - 22146052
Alignment:
Q  1 taatcacgattactatgtctgattcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaatggtcat 100  Q
    ||||||| |||| ||| ||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  22146354 taatcacaattattatatccaattcaattgctagggtaagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagttagtgttaatagtcat 22146255  T
Q  101 acacatgata--------agcattaagcaagaataattatgaataaagactaaattgtattgatagcaaca--gagtcaaaagctacatggattcacagg 190  Q
    ||||| ||||        ||||||||| ||||||| ||||||||||| ||| |||| |||||||| ||| |  |||||||||| |   |||||| ||||     
T  22146254 acacacgatattaagaaaagcattaagtaagaatacttatgaataaatactgaattatattgataacaatatagagtcaaaagttgtgtggatttacaga 22146155  T
Q  191 tacaatagattcaccttg-cttaatcaaagaaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgtt 289  Q
    ||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  22146154 tacaatagattcatcttggcttaatcaaaggaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgtt 22146055  T
Q  290 cct 292  Q
    |||    
T  22146054 cct 22146052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 28117621 - 28117508
Alignment:
Q  124 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 222  Q
    ||||||| |||||||||||| |||| |||||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||||| ||    
T  28117621 aataattctgaataaagactgaattatattgataacaatagagtcaaaagctacgtgggttcacagatacaatagattcatcttgacttaatcaaag-aa 28117523  T
Q  223 attagctagacatag 237  Q
    |||||||||||||||    
T  28117522 attagctagacatag 28117508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 9314122 - 9314235
Alignment:
Q  124 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 222  Q
    ||||||| |||||||||||| |||| |||||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||||| ||    
T  9314122 aataattctgaataaagactgaattatattgataacaatagagtcaaaagctacgtgggttcacagatacaatagattcatcttgacttaatcaaag-aa 9314220  T
Q  223 attagctagacatag 237  Q
    ||||||| |||||||    
T  9314221 attagctcgacatag 9314235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 22464196 - 22464083
Alignment:
Q  124 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 222  Q
    ||||||| |||||||| ||| |||| |||||||| ||| ||||||||||||||  ||||||||||| ||||||||||||| |||| ||||||||||| ||    
T  22464196 aataattctgaataaaaactgaattttattgataacaatagagtcaaaagctatgtggattcacagatacaatagattcatcttgacttaatcaaag-aa 22464098  T
Q  223 attagctagacatag 237  Q
    |||||||||||||||    
T  22464097 attagctagacatag 22464083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 61 - 321
Target Start/End: Original strand, 7395120 - 7395379
Alignment:
Q  61 tcaattcaagcaatcgatagaagctagtgttaatggtcatacacatgata--------agcattaagcaagaataattatgaataaagactaaattgtat 152  Q
    |||||||||||||||||||||| ||||||| ||| | |||||||||||||        ||||| ||||||||||||||||||||||||| |||  | |||    
T  7395120 tcaattcaagcaatcgatagaaactagtgt-aatagccatacacatgatattaagaaaagcatcaagcaagaataattatgaataaagattaa--tatat 7395216  T
Q  153 tgatagcaacagagtcaaaagctacatgga-ttcacaggtacaatagattcacctt-gcttaatcaaagaaaattagctagacatagagatacaaataaa 250  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||        ||||| |||||||||||||||||||||||    
T  7395217 tgatagcaacagagtcaaaaactacatggaattcacagatacaatagattcaccttagcttaa--------aattaactagacatagagatacaaataaa 7395308  T
Q  251 tagcatggaaaataaaattaaccatgaaaacatgttgttcctcaattctctctctgtgccgtgttgctaat 321  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||    
T  7395309 tagcatgaaaaataaaattaaccacaaaaacatgttgttcctcaattctctctctgtgccgtgttgttaat 7395379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 24605442 - 24605656
Alignment:
Q  23 ttcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaatggtcatacacatgat--------aagca 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||        |||||    
T  24605442 ttcaacagctagggttagtagtcaattgaaacctaaattcaattcaaacaatcgatagaagctagtgttaatagtcatacacatgatattaagaaaagca 24605541  T
Q  115 ttaagcaagaataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcacctt-gcttaa 213  Q
    |||||||| |||||||||||||||| ||| |||| ||||||||  || ||||||||||||||| ||| ||||||  ||||||||||||| ||| ||||||    
T  24605542 ttaagcaataataattatgaataaatactgaattatattgataataatagagtcaaaagctac-tgg-ttcacatatacaatagattcatcttggcttaa 24605639  T
Q  214 tcaaagaaaattagcta 230  Q
    |||||| ||||||||||    
T  24605640 tcaaaggaaattagcta 24605656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 2541442 - 2541363
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgttcctcaattctc 300  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  2541442 aaattagctaaacatagaaatacaaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctc 2541363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 22093476 - 22093579
Alignment:
Q  219 gaaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgttcctcaattctctctctgtgccgtgttgct 318  Q
    |||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||  | ||| ||||||||||||||| |||| ||| |||||||||    
T  22093476 gaaatttagctacacatagagatacaaataaatatcttggaaaataaaattaaccatgtcatcatcttgttcctcaattctttctcagtgtcgtgttgct 22093575  T
Q  319 aatt 322  Q
    ||||    
T  22093576 aatt 22093579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 24605386 - 24605438
Alignment:
Q  31 ctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaag 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24605386 ctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaag 24605438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 36037168 - 36037411
Alignment:
Q  1 taatcacgattactatgtctgattcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaatggtcat 100  Q
    ||||||| ||||||||||| | |||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||    
T  36037168 taatcacaattactatgtccggttcattagctaggattagtaatcaattgtaacctaaattcaattcaagcaatcgatagaagctagtgttaataatcat 36037267  T
Q  101 acacatgata--------agcattaagcaagaataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggta 192  Q
    ||||| ||||        ||||||||||||||||||||||||||||| ||| |||| |||||||| ||| ||||||||||||||||| |||||||||  |    
T  36037268 acacacgatattatgaaaagcattaagcaagaataattatgaataaatactgaattatattgataacaatagagtcaaaagctacatagattcacagaga 36037367  T
Q  193 caatagattcacctt-gcttaatcaaagaaaattagctagacat 235  Q
    | ||||||||| ||| |||||||||||| |||||||||| ||||    
T  36037368 cgatagattcatcttggcttaatcaaaggaaattagctacacat 36037411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 2783803 - 2783736
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgt 288  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  2783803 aaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 2783736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 35412312 - 35412227
Alignment:
Q  211 taatcaaagaaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgttcctcaattct 299  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||  | |||||||||||||||||||    
T  35412312 taatcaaaggaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctcaattct 35412227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 18645112 - 18645187
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgttcctcaattct 299  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||  | | |||||||||||||||||    
T  18645112 aaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accgtgttgttcctcaattct 18645187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 26808936 - 26809088
Alignment:
Q  1 taatcacgattactatgtctgattcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaatggtcat 100  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||    
T  26808936 taatcacaattactaggtctggttcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaacctagtgttattagtcat 26809035  T
Q  101 acacatgat--------aagcattaagcaagaataattatgaataaagactaa 145  Q
    ||||| |||        ||||||||||||||||||||||||||||||||||||    
T  26809036 acacacgatattaagaaaagcattaagcaagaataattatgaataaagactaa 26809088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 221 - 321
Target Start/End: Original strand, 26809173 - 26809273
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgttcctcaattctctctctgtgccgtgttgctaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  26809173 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacaggttgttcctcaattctctctctatgccgtgttgctaa 26809272  T
Q  321 t 321  Q
    |    
T  26809273 t 26809273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 22083779 - 22083878
Alignment:
Q  124 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 222  Q
    ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||| ||| |||| || ||||||||||||| |||| ||||||||||||||    
T  22083779 aataattctgaataaagactaaattatattgataacaatagagtcaaaagctacgtgggttcagagatacaatagattcatcttgacttaatcaaagaaa 22083878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 6214516 - 6214616
Alignment:
Q  56 taaattcaattcaagcaatcgatagaagctagtgttaatggtcatacacatgat--------aagcattaagcaagaataattatgaataaagactaaat 147  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||| | |||        ||||||||||||||||||||||||||||| ||||||||    
T  6214516 taaattcaattcaagcaatcgataaaagctagtgttaatagtcagacaaacgatattaagaaaagcattaagcaagaataattatgaataatgactaaat 6214615  T
Q  148 t 148  Q
    |    
T  6214616 t 6214616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 6215034 - 6215104
Alignment:
Q  150 tattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcacctt-gcttaatcaaag 219  Q
    |||||||| ||| | ||||||||||||||||||||||||| |||||||||||||  || ||||||||||||    
T  6215034 tattgataacaatatagtcaaaagctacatggattcacagatacaatagattcattttggcttaatcaaag 6215104  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 587225 - 587132
Alignment:
Q  1 taatcacgattactatgtctgattcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaat 94  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  587225 taatcacaattactatgtccggttcaatagctagggttagtagtcagttgaaacctaaattcaattcaagcaatcgatagaagttagtgttaat 587132  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 626697 - 626790
Alignment:
Q  1 taatcacgattactatgtctgattcaatagctagggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaat 94  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  626697 taatcacaattactatgtccggttcaatagttagggttagtagtcagttgaaacctaaattcaattcaagcaatcgatagaagttagtgttaat 626790  T

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Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 35432716 - 35432834
Alignment:
Q  35 ggttagtagtcaattgaaacctaaattcaattcaagcaatcgatagaagctagtgttaatggtcatacacatgat--------aagcattaagcaagaat 126  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||        |||||||||||||||||    
T  35432716 ggttagtagtcaattggaacctaaattcaattcaagcaatcgatataagctagtgttaatagtcatacacacgatattaagaaaagcattaagcaagaat 35432815  T
Q  127 aattatgaataaagactaa 145  Q
    |||||||||||||||||||    
T  35432816 aattatgaataaagactaa 35432834  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 28562796 - 28562863
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgt 288  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  28562796 aaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 28562863  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 28566364 - 28566431
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgt 288  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  28566364 aaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 28566431  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 42062623 - 42062548
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgttcctcaattct 299  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||  | |||||||||||||||||||    
T  42062623 aaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctcaattct 42062548  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 17944432 - 17944318
Alignment:
Q  124 aataattatgaataaagactaaattgtattgatagcaacagagtc-aaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaa 221  Q
    ||||||| |||||||||||| |||| |||||||| ||| |||||| |||| | || ||| ||||||  ||||||||||||| |||| ||||||||||| |    
T  17944432 aataattctgaataaagactgaattatattgataacaatagagtcaaaaaacaacgtgggttcacaaatacaatagattcatcttgacttaatcaaag-a 17944334  T
Q  222 aattagctagacatag 237  Q
    ||||||||||||||||    
T  17944333 aattagctagacatag 17944318  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 11059478 - 11059410
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgtt 289  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  11059478 aaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgtt 11059410  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 13517986 - 13517919
Alignment:
Q  221 aaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacatgttgt 288  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  13517986 aaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgt 13517919  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 30719558 - 30719445
Alignment:
Q  124 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 222  Q
    ||||||| |||||||| ||| |||| |||||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||||| ||    
T  30719558 aataattctgaataaaaactgaattatattgataacaatagagtcaaaagctacgtgggttcacagatacaatagattcatcttgacttaatcaaag-aa 30719460  T
Q  223 attagctagacatag 237  Q
    ||||| |||||||||    
T  30719459 attagttagacatag 30719445  T

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Target: scaffold0134 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 7019 - 6906
Alignment:
Q  124 aataattatgaataaagactaaattgtattgatagcaacagagtcaaaagctacatggattcacaggtacaatagattcaccttg-cttaatcaaagaaa 222  Q
    ||||||| |||||||||||| |||| ||||||||  || |||||||||||||||  || ||||||| ||||||||||||| |||| ||||||||||| ||    
T  7019 aataattctgaataaagactgaattatattgataagaatagagtcaaaagctacccgggttcacagatacaatagattcatcttgacttaatcaaag-aa 6921  T
Q  223 attagctagacatag 237  Q
    |||||||||||||||    
T  6920 attagctagacatag 6906  T

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