View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_low_11 (Length: 311)
Name: NF1870_low_11
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 20931640 - 20931915
Alignment:
| Q |
2 |
ttcattggacatcagaaaacgtattggcactgaaaacaaaagctttcctattattatccacaaccatatcagttaatcatatgccaatctcattcaatcc |
101 |
Q |
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| T |
20931640 |
ttcattggtcagcagaaaacgaattggcactgaaaacaaaagcttttctattattatccacaaccatatcagttaatcatatgccaatctaattcaatcc |
20931739 |
T |
|
| Q |
102 |
aagatagtgataggcttaaaaagattcactttannnnnnnnctagttggggaaattcccacttcacttgcattcttttccttaccgtcaaaaaattaaag |
201 |
Q |
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| T |
20931740 |
aagatagtgataggcttaaaaagattcactttattttttt-ctagttggggaaattcctacttcacttgcattcttttccttaccgtcaaaaaattaaag |
20931838 |
T |
|
| Q |
202 |
cattcctatcctattttactttagagcagtattaattaaaccaagttgacaatcgtattcaacaccgtatgttgtat |
278 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20931839 |
cattcctatcctattttactttaaagcagtgttaattaaaccaagttgacaatcgtattcaacaccgtatgttgtat |
20931915 |
T |
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