View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1870_low_15 (Length: 259)

Name: NF1870_low_15
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1870_low_15
NF1870_low_15
[»] chr4 (1 HSPs)
chr4 (9-75)||(28987670-28987736)
[»] chr8 (2 HSPs)
chr8 (9-62)||(29022910-29022963)
chr8 (164-203)||(29023060-29023099)
[»] chr2 (1 HSPs)
chr2 (9-62)||(23357925-23357978)
[»] chr5 (2 HSPs)
chr5 (9-62)||(41740977-41741030)
chr5 (164-203)||(41740839-41740878)
[»] chr1 (1 HSPs)
chr1 (9-62)||(292104-292157)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 28987736 - 28987670
Alignment:
Q  9 gagatgaagaagggtgtagaaacagtgaagaaagttgtggagaaatggaagggaagcgcagaaactg 75  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  28987736 gagatgaggaagggtgtagaaacagtgaagaaagttgtggagaaatggaagggaaacacagaaactg 28987670  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 29022910 - 29022963
Alignment:
Q  9 gagatgaagaagggtgtagaaacagtgaagaaagttgtggagaaatggaaggga 62  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  29022910 gagatgaggaagtgtgtagaaacagtgaagaaggttgtggagaaatggaaggga 29022963  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 29023060 - 29023099
Alignment:
Q  164 aagttgggatgggttacagttatttttgttataaatgtga 203  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  29023060 aagttgggttgggttgcagttatttttgttataaatgtga 29023099  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 23357925 - 23357978
Alignment:
Q  9 gagatgaagaagggtgtagaaacagtgaagaaagttgtggagaaatggaaggga 62  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  23357925 gagatgaggaagtgtgtagaaacagtgaagaaggttgtggagaaatggaaggga 23357978  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 41741030 - 41740977
Alignment:
Q  9 gagatgaagaagggtgtagaaacagtgaagaaagttgtggagaaatggaaggga 62  Q
    ||||||| |||| |||||||||| |||||||| ||||||||||||| |||||||    
T  41741030 gagatgaggaagtgtgtagaaaccgtgaagaaggttgtggagaaattgaaggga 41740977  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 41740878 - 41740839
Alignment:
Q  164 aagttgggatgggttacagttatttttgttataaatgtga 203  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  41740878 aagttgggttgggttgcagttatttttgttataaatgtga 41740839  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 292157 - 292104
Alignment:
Q  9 gagatgaagaagggtgtagaaacagtgaagaaagttgtggagaaatggaaggga 62  Q
    |||||||  ||| |||||||||| ||||||||  ||||||||||||||||||||    
T  292157 gagatgagaaagtgtgtagaaaccgtgaagaagtttgtggagaaatggaaggga 292104  T

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