View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_low_2 (Length: 725)
Name: NF1870_low_2
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 5e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 504 - 706
Target Start/End: Complemental strand, 4745058 - 4744856
Alignment:
| Q |
504 |
attgtgaaattcgtataaaaatattatatggtgggataagaagcatgtgcagcaatgccacattgaccccgaggttcaccactttcccttaacactttca |
603 |
Q |
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| T |
4745058 |
attgtgaaattcgtataaaaatattatatgatgggataagaagcatgtgcagcaatgccacattgacctcctggttcaccactttccctcaacaacttca |
4744959 |
T |
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| Q |
604 |
tgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatatttagttccatcttcacttacaccgtaaccaactgcagcaactgcatg |
703 |
Q |
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| T |
4744958 |
tgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatacttagttccatcttcacttacaccgtaaccaactgcagtaactgcatg |
4744859 |
T |
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| Q |
704 |
gtt |
706 |
Q |
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||| |
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| T |
4744858 |
gtt |
4744856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 144 - 319
Target Start/End: Complemental strand, 4745392 - 4745217
Alignment:
| Q |
144 |
ctttaaaattgttctaaacttcatttactactcacttatctctctgcccatcacagaaattgtgcaatcgtttgagtttcaaaatcagcaagttacaaag |
243 |
Q |
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| T |
4745392 |
ctttaaagttgttccaaacttcacttactacccactcatctctctgccaatcatataaattgtgcaattgttaaagtatgaaaattagtcagctacgaag |
4745293 |
T |
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| Q |
244 |
gttaaaatatgggatgtaagctccaaacattgatttggcaattaccaagttacaagacgaaacataaaactaacat |
319 |
Q |
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| T |
4745292 |
gttaaagtatgggatgtgaggtccaaactttgatttggcgattaccaagttacaagccgaaacataaaaccaacat |
4745217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 528 - 706
Target Start/End: Complemental strand, 4736523 - 4736345
Alignment:
| Q |
528 |
tatatggtgggataagaagcatgtgcagcaatgccacattgaccccgaggttcaccactttcccttaacactttcatgtagccttcttcaccccaacctt |
627 |
Q |
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| T |
4736523 |
tatatagtaggataagcagcatgtacagcaatgctacattgacctccagttgcactactttcccttagcaccttcatgtagcctttctcaccccatgttt |
4736424 |
T |
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| Q |
628 |
taccccaagaattcttaatcaaccaatatttagttccatcttcacttacaccgtaaccaactgcagcaactgcatggtt |
706 |
Q |
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| T |
4736423 |
caccccaagaattcttaatcaaccaatacttcttccctgcttcacttaccccataaccaattatagtaactgcatggtt |
4736345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 4745141 - 4745098
Alignment:
| Q |
387 |
atataggcagaatttcaatacaatataagcacgaacacgaagaa |
430 |
Q |
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| T |
4745141 |
atataagcagaatttcagtacaatataagcacgaatacgaagaa |
4745098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 28963176 - 28963075
Alignment:
| Q |
5 |
gagagagatgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcattttt |
104 |
Q |
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|||||| |||||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28963176 |
gagagaaatgaattagttaaaggaaagataaaaatccaaggtcagcaattcattcctaagttgtcgtgcatggtttgctctcgtaccataaagcattttt |
28963077 |
T |
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| Q |
105 |
ct |
106 |
Q |
| |
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|| |
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| T |
28963076 |
ct |
28963075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 3442750 - 3442843
Alignment:
| Q |
12 |
atgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttc |
105 |
Q |
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| T |
3442750 |
atgaattagttaatggaaagataaaaatccaagggcagcaattcattcgtaagttgtcgtgcatggtttgttctcgtgcaataaagcatttttc |
3442843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 24115835 - 24115931
Alignment:
| Q |
5 |
gagagagatgaattagttaaaagaaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcat-ggtttgctctcgtaccataaagcat |
100 |
Q |
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| T |
24115835 |
gagagaaatgaattaattaaatgaaagataaaaatccaagggaagcaattcattcgcaagttgtcgtgcatgggtttgttctcgtaccataaagcat |
24115931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 26683799 - 26683875
Alignment:
| Q |
28 |
aaagataaaaattcaagagcagcaattcattcttaagttgtcgtgcatggtttgctctcgtaccataaagcatttttc |
105 |
Q |
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| T |
26683799 |
aaagataaaaattcaagggcggca-ttcatttgcaagttgtcgtgcatggtttgctcttgtaccataaagcatttttc |
26683875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 667
Target Start/End: Complemental strand, 30892934 - 30892870
Alignment:
| Q |
603 |
atgtagccttcttcaccccaacctttaccccaagaattcttaatcaaccaatatttagttccatc |
667 |
Q |
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| T |
30892934 |
atgtatccttcttcaccccaatcatttccccatgaattcttaaccaaccaatacttggttccatc |
30892870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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