View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_low_21 (Length: 242)
Name: NF1870_low_21
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18323012 - 18322922
Alignment:
| Q |
1 |
ttaaacaattcaagatttttacatccaaacaaaccaccttgacacttatctccaccccataaaaatcgtctttgcgaccaatacattcaaa |
91 |
Q |
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| T |
18323012 |
ttaaacaattcaagatttttacacccaaacaaaccaccttgacacttatctccaccccataaaaatcgtctttacaaccaatacattcaaa |
18322922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 18327161 - 18327125
Alignment:
| Q |
77 |
accaatacattcaaaaccttctttggtaccttataaa |
113 |
Q |
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| T |
18327161 |
accaatacattcaaaaccttctttggtaccttataaa |
18327125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 18326929 - 18326889
Alignment:
| Q |
188 |
aattttccttgccaaga--taagtcttgctcggaatggttt |
226 |
Q |
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| T |
18326929 |
aattttccttgccaagagataagtcttgctcggaatggttt |
18326889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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