View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1870_low_23 (Length: 239)

Name: NF1870_low_23
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1870_low_23
NF1870_low_23
[»] chr4 (17 HSPs)
chr4 (1-237)||(7907763-7907999)
chr4 (1-170)||(7877231-7877394)
chr4 (1-171)||(7774233-7774397)
chr4 (1-96)||(7904611-7904706)
chr4 (1-58)||(7800254-7800311)
chr4 (1-58)||(7813097-7813154)
chr4 (1-58)||(7822586-7822643)
chr4 (1-94)||(45366625-45366718)
chr4 (3-87)||(45372463-45372547)
chr4 (1-105)||(48902520-48902624)
chr4 (1-112)||(45385191-45385302)
chr4 (1-59)||(48156831-48156889)
chr4 (1-58)||(49044633-49044690)
chr4 (1-58)||(49049003-49049060)
chr4 (7-50)||(48898347-48898390)
chr4 (1-103)||(48735719-48735821)
chr4 (1-58)||(7771021-7771078)
[»] chr8 (3 HSPs)
chr8 (1-68)||(12199914-12199981)
chr8 (1-68)||(12444342-12444409)
chr8 (1-58)||(15348479-15348536)
[»] chr3 (2 HSPs)
chr3 (7-58)||(11006372-11006423)
chr3 (1-84)||(47452311-47452394)
[»] chr6 (1 HSPs)
chr6 (1-47)||(21980048-21980094)
[»] chr1 (1 HSPs)
chr1 (4-58)||(24340031-24340085)
[»] chr5 (2 HSPs)
chr5 (1-50)||(29687676-29687725)
chr5 (1-53)||(29712873-29712925)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7907999 - 7907763
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggca 100  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  7907999 agagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgaggaagatacggca 7907900  T
Q  101 gtgtcgtcgtcttcttcttcttctcctccgagctctctaccatcttgtaaaccttaattttacaggaagggtttccaatttaccactcgatcagtcttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7907899 gtgtcgtcgtcttcttcttcttctcctccgagctctctaccatcttgtaaaccctaattttacaggaagggtttccaatttaccactcgatcagtcttat 7907800  T
Q  201 ataagcagagttttaaaaaccgatgatgatgatgatg 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  7907799 ataagcagagttttaaaaaccgatgatgatgatgatg 7907763  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 7877394 - 7877231
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggca 100  Q
    ||||||||||||  ||||||||   | |||||||||  ||||||||||||| ||||||| |  ||||| |||| ||||||||||||| |||||||||||     
T  7877394 agagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatacggcc 7877295  T
Q  101 gtgtcgtcgtcttcttcttcttctcctccgagctctctaccatcttgtaaaccttaattttacaggaagg 170  Q
    ||      |||||||||||||||||||||  || ||||||||||||||||| | ||||||||||||||||    
T  7877294 gt------gtcttcttcttcttctcctccatgcactctaccatcttgtaaatcctaattttacaggaagg 7877231  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 7774233 - 7774397
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggca 100  Q
    ||||||||||||  |||||||||| | |||||| |   ||||||||||||||||| || ||  | ||| || | ||||||||||||| ||||||||||||    
T  7774233 agagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgaggaagatacggca 7774332  T
Q  101 gtgtcgtcgtcttcttcttcttctcctccgagctctctaccatcttgtaaaccttaattttacaggaaggg 171  Q
    |||||      |||| ||||||||||| || |||||||||||||||||||||| ||||||||||| |||||    
T  7774333 gtgtc------ttctgcttcttctcctgcgtgctctctaccatcttgtaaaccctaattttacagaaaggg 7774397  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7904706 - 7904611
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatac 96  Q
    |||||||||||| ||||||||||| | |||||||||  |||||||||||| ||||||||||  | ||| || | |||||||||| || ||||||||    
T  7904706 agagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaataatcaattcacgaggaagatac 7904611  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7800311 - 7800254
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    |||||||||||||| ||||||||| |||||||||||  |||| |||||||||||||||    
T  7800311 agagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacc 7800254  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7813154 - 7813097
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    |||||||||||||| ||||||||| |||||||||||  |||| |||||||||||||||    
T  7813154 agagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacc 7813097  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7822643 - 7822586
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    |||||||||||||| ||||||||| |||||||||||  |||| |||||||||||||||    
T  7822643 agagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacc 7822586  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 45366625 - 45366718
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagat 94  Q
    |||||||||||  ||||||||||  |||||||||||  |||||||||||| || ||||  |||||||| ||||  |||||||||||| ||||||    
T  45366625 agagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 45372463 - 45372547
Alignment:
Q  3 agaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatga 87  Q
    ||||||||| |||||||||||| | |||||||||  ||||||||||||||||||||  ||||| || || |  ||||||||||||    
T  45372463 agaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaatttgaatcatcaattcatga 45372547  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 48902624 - 48902520
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggca 100  Q
    ||||||||||| |||||||||||| | ||||||||    |||||||| |||||||||||| | |  || ||||  |||||||||||| | ||||||||||    
T  48902624 agagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgaggtagatacggca 48902525  T
Q  101 gtgtc 105  Q
    |||||    
T  48902524 gtgtc 48902520  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45385191 - 45385302
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggca 100  Q
    ||||||||||| ||||||||||| || |||||||||   |||||||| || || ||||  |||||||| ||||  |||||||||| | | | || |||||    
T  45385191 agagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtaggatttggatcatcaattcattaggcatatgcggca 45385290  T
Q  101 gtgtcgtcgtct 112  Q
    ||||||||||||    
T  45385291 gtgtcgtcgtct 45385302  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 48156831 - 48156889
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacca 59  Q
    ||||||||||| |||||||||||  |||||||||||  ||||||||||||||| |||||    
T  48156831 agagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacca 48156889  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49044633 - 49044690
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    |||||||||||| ||||||||||| |||||||||||  ||||||| |||| |||||||    
T  49044633 agagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacc 49044690  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49049003 - 49049060
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    |||||||||||| ||||||||||| |||||||||||  ||||||| ||||| ||||||    
T  49049003 agagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacc 49049060  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 48898390 - 48898347
Alignment:
Q  7 aaccatgacttacaaacagacttgaaacgtgcaagagacttcac 50  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||    
T  48898390 aaccaagacttacaaacacacttgaaacgtgtaagagacttcac 48898347  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 48735719 - 48735821
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggca 100  Q
    ||||||||||| |||||||||||| | ||||||||   ||||||||||||||| |||| ||| || || || |  ||||| |||||| | ||| ||||||    
T  48735719 agagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgaggcagaaacggca 48735818  T
Q  101 gtg 103  Q
    |||    
T  48735819 gtg 48735821  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7771078 - 7771021
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    ||||||||||| |||||||||||  | ||||||| |  ||||||||||||||||||||    
T  7771078 agagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacc 7771021  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12199981 - 12199914
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 68  Q
    |||||||||||||||||||||||| | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12199981 agagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12199914  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12444409 - 12444342
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 68  Q
    |||||||||||||||||||||||| | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12444409 agagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12444342  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15348536 - 15348479
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    ||||||||||| |||||||||||  | |||||||||  ||||||||||||||| ||||    
T  15348536 agagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacc 15348479  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 11006372 - 11006423
Alignment:
Q  7 aaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    |||||||||||||||||| |||||||||||  ||| ||||||||||||||||    
T  11006372 aaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacc 11006423  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 47452311 - 47452394
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattca 84  Q
    |||||||||||||||||| |||   ||||||| ||| ||||||||||||||||||||| ||  | ||||||||  |||||||||    
T  47452311 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattca 47452394  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21980048 - 21980094
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagactt 47  Q
    ||||||||||| |||||||||||| ||||||||||||  ||||||||    
T  21980048 agagaaaaccaagacttacaaacacacttgaaacgtgagagagactt 21980094  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 24340085 - 24340031
Alignment:
Q  4 gaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 58  Q
    ||||||||||||||||||||||| ||||||||   ||||||||| ||||| ||||    
T  24340085 gaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaacc 24340031  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29687725 - 29687676
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcac 50  Q
    ||||||||||| |||||||||||| ||||||| |||  ||||||||||||    
T  29687725 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 29687676  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29712873 - 29712925
Alignment:
Q  1 agagaaaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccgg 53  Q
    |||||||||||| ||||||||||  ||||||||||   |||||||||||||||    
T  29712873 agagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 29712925  T

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