View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1870_low_28 (Length: 227)

Name: NF1870_low_28
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1870_low_28
NF1870_low_28
[»] chr1 (1 HSPs)
chr1 (1-227)||(25784169-25784395)
[»] chr2 (4 HSPs)
chr2 (125-203)||(13518656-13518734)
chr2 (116-213)||(28438770-28438867)
chr2 (166-220)||(7706933-7706987)
chr2 (144-203)||(23393967-23394026)
[»] chr8 (3 HSPs)
chr8 (142-220)||(10647331-10647409)
chr8 (167-214)||(14625877-14625924)
chr8 (21-61)||(32878852-32878892)
[»] chr4 (7 HSPs)
chr4 (125-227)||(44810511-44810613)
chr4 (6-66)||(17263144-17263204)
chr4 (143-211)||(12880093-12880161)
chr4 (143-214)||(17263289-17263359)
chr4 (144-203)||(28571771-28571830)
chr4 (116-220)||(18464175-18464279)
chr4 (91-162)||(25025426-25025497)
[»] chr7 (1 HSPs)
chr7 (129-220)||(9788752-9788843)
[»] chr6 (3 HSPs)
chr6 (143-202)||(24322450-24322509)
chr6 (169-214)||(11005080-11005125)
chr6 (142-214)||(26271072-26271144)
[»] chr3 (3 HSPs)
chr3 (125-197)||(32197703-32197775)
chr3 (143-203)||(27820525-27820585)
chr3 (174-202)||(5112805-5112833)
[»] chr5 (3 HSPs)
chr5 (127-214)||(15434941-15435028)
chr5 (145-220)||(27248069-27248144)
chr5 (166-203)||(26254226-26254263)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25784169 - 25784395
Alignment:
Q  1 ttcaatgggatctaacattcctccagatgtcatgttgctcctcaatcaccataaaggtcatgcgtgctagtatatggtaaagggtcgtaggttttatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25784169 ttcaatgggatctaacattcctccagatgtcatgttgcttctcaatcaccataaaggtcatgcgtgctagtatatggtaaagggtcgtaggttttatatg 25784268  T
Q  101 tggtcactcaattatttaaggcatggacttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25784269 tggtcactcaattatttaaggcatggacttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttt 25784368  T
Q  201 tacttatgaatctttaaattctaccac 227  Q
    ||||||| |||||||||||||||||||    
T  25784369 tacttatcaatctttaaattctaccac 25784395  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 13518734 - 13518656
Alignment:
Q  125 ggacttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttac 203  Q
    ||||||||| | | |||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  13518734 ggacttacaatttcatcggttattgaaacataaacatagtagaaattcctaaattatcatctaaaggaaccacttttac 13518656  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 28438770 - 28438867
Alignment:
Q  116 ttaaggcatggacttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatct 213  Q
    |||||||| |||||||| ||||  |  ||||||||| |||| |||||| | | ||||||||||||||||| |||| ||||| |||||| |||||||||    
T  28438770 ttaaggcagggacttactctctcgtatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatgaatct 28438867  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 7706933 - 7706987
Alignment:
Q  166 gaaattcctaaattgtcatctaaaggaaccacttttacttatgaatctttaaatt 220  Q
    ||||||| |||||||||||||||||||||||||||||| ||  |||||| |||||    
T  7706933 gaaattcttaaattgtcatctaaaggaaccacttttacatacaaatcttaaaatt 7706987  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 23394026 - 23393967
Alignment:
Q  144 taattgaaacataaacatagaagaaattcct-aaattgtcatctaaaggaaccacttttac 203  Q
    |||||||||||||| |||||  ||||||||| ||||||||||||||| ||| |||||||||    
T  23394026 taattgaaacataa-catagttgaaattccttaaattgtcatctaaatgaatcacttttac 23393967  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 10647331 - 10647409
Alignment:
Q  142 ggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatctttaaatt 220  Q
    ||||||||||||| || ||||| | | |||||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  10647331 ggtaattgaaacagaatcatagtatatattcctaaattgtcatctaaagaaaccacttttacatatgaatcttcaaatt 10647409  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 14625877 - 14625924
Alignment:
Q  167 aaattcctaaattgtcatctaaaggaaccacttttacttatgaatctt 214  Q
    |||||||||||||||||||||  |||||||||||||  ||||||||||    
T  14625877 aaattcctaaattgtcatctatcggaaccacttttaaatatgaatctt 14625924  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 32878892 - 32878852
Alignment:
Q  21 ctccagatgtcatgttgctcctcaatcaccataaaggtcat 61  Q
    ||||| |||||||||||||||||||||||| |||| |||||    
T  32878892 ctccaaatgtcatgttgctcctcaatcaccttaaatgtcat 32878852  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 44810511 - 44810613
Alignment:
Q  125 ggacttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatctttaaattctac 224  Q
    ||||||||||||| || | |||||||||||||| ||||| ||| ||| ||||||| |||||||||| ||||||||| || ||||||||||  |||| |||    
T  44810511 ggacttacactctcatagataattgaaacataagcatagtagatatttctaaattttcatctaaagaaaccactttcacctatgaatcttagaattttac 44810610  T
Q  225 cac 227  Q
    |||    
T  44810611 cac 44810613  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 17263144 - 17263204
Alignment:
Q  6 tgggatctaacattcctccagatgtcatgttgctcctcaatcaccataaaggtcatgcgtg 66  Q
    |||||||| |||| ||||||||||||| |||||| |||||||||| |||||||||||||||    
T  17263144 tgggatctgacatccctccagatgtcaagttgcttctcaatcaccctaaaggtcatgcgtg 17263204  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 12880093 - 12880161
Alignment:
Q  143 gtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaat 211  Q
    |||||||||| |||| ||||| ||| ||| ||||||||||||||||| |||| |||||||| |||||||    
T  12880093 gtaattgaaatataagcatagtagatatttctaaattgtcatctaaatgaacaacttttacctatgaat 12880161  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 17263289 - 17263359
Alignment:
Q  143 gtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatctt 214  Q
    |||||||| ||||| |||||| |||||||||||||||||| | |||| ||||||||||||| || |||||||    
T  17263289 gtaattgatacatagacatagtagaaattcctaaattgtcgtttaaa-gaaccacttttacctaggaatctt 17263359  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 28571771 - 28571830
Alignment:
Q  144 taattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttac 203  Q
    |||||||||||||  |||   ||||||||||||||| |||||||||||||||||||||||    
T  28571771 taattgaaacataggcatgatagaaattcctaaattatcatctaaaggaaccacttttac 28571830  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 18464175 - 18464279
Alignment:
Q  116 ttaaggcatggacttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatcttt 215  Q
    ||||||||  |||||||||||  || |||||||||||| |||  || | ||| ||| |||||||| |||||| |||||||| |||||| ||| ||||||     
T  18464175 ttaaggcaaagacttacactcccataggtaattgaaacttaagtattgtagatatttctaaattgacatctagaggaaccaattttacctattaatctta 18464274  T
Q  216 aaatt 220  Q
    |||||    
T  18464275 aaatt 18464279  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 25025497 - 25025426
Alignment:
Q  91 gttttatatgtggtcactcaattatttaaggcatggacttacactctgatcggtaattgaaacataaacata 162  Q
    |||| ||||||||||||| | ||||||||||||  |||||||||||| |   ||||||||||||||| ||||    
T  25025497 gtttcatatgtggtcacttagttatttaaggcagtgacttacactcttacttgtaattgaaacataagcata 25025426  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 9788843 - 9788752
Alignment:
Q  129 ttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatctttaaatt 220  Q
    |||| |||| || |||||||||||||||| ||||| ||| ||| ||||||| ||||||||||||| || |||||||||||| |||| |||||    
T  9788843 ttactctctcataggtaattgaaacataatcatagtagagatttctaaattatcatctaaaggaaacatttttacttatgagtcttaaaatt 9788752  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 24322509 - 24322450
Alignment:
Q  143 gtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccactttta 202  Q
    ||||||||||||||||||||| ||| | ||||||||||||||||||| ||||||||||||    
T  24322509 gtaattgaaacataaacatagtagatagtcctaaattgtcatctaaatgaaccactttta 24322450  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 11005125 - 11005080
Alignment:
Q  169 attcctaaattgtcatctaaaggaaccacttttacttatgaatctt 214  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  11005125 attcctaaagtgtcatctaaaggaaccacttttacctatgaatctt 11005080  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 26271144 - 26271072
Alignment:
Q  142 ggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatctt 214  Q
    ||||||||||| |||  ||||  |||||||||| |||| | ||||||| |||||||||||||||| |||||||    
T  26271144 ggtaattgaaatataggcataatagaaattccttaattttaatctaaatgaaccacttttacttaggaatctt 26271072  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 32197703 - 32197775
Alignment:
Q  125 ggacttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccac 197  Q
    |||||||| |||| |  ||||||| ||||||| |||||| ||||||||||||||||| |||||||||||||||    
T  32197703 ggacttactctctcacaggtaattaaaacatagacatagtagaaattcctaaattgtaatctaaaggaaccac 32197775  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 27820585 - 27820525
Alignment:
Q  143 gtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttac 203  Q
    |||||||||||| |  ||||| ||||||| ||||||||||||||||| |||||||||||||    
T  27820585 gtaattgaaacacatgcatagtagaaatttctaaattgtcatctaaaagaaccacttttac 27820525  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 5112805 - 5112833
Alignment:
Q  174 taaattgtcatctaaaggaaccactttta 202  Q
    |||||||||||||||||||||||||||||    
T  5112805 taaattgtcatctaaaggaaccactttta 5112833  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 15435028 - 15434941
Alignment:
Q  127 acttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatctt 214  Q
    ||||||||||| || | |||||||||||||| || ||  || ||||||||||| ||||||||||||| ||||||| | ||||||||||    
T  15435028 acttacactctcatagataattgaaacataagcagagttgatattcctaaattttcatctaaaggaatcacttttgcgtatgaatctt 15434941  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 27248144 - 27248069
Alignment:
Q  145 aattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatgaatctttaaatt 220  Q
    ||||||||||||  ||||| | ||||||||||||||  || |||||||||||||||||| || ||||||| |||||    
T  27248144 aattgaaacatatgcatagtataaattcctaaattgatatataaaggaaccacttttacctaagaatcttaaaatt 27248069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 26254263 - 26254226
Alignment:
Q  166 gaaattcctaaattgtcatctaaaggaaccacttttac 203  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  26254263 gaaattcctagattgtcatataaaggaaccacttttac 26254226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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