View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_low_31 (Length: 217)
Name: NF1870_low_31
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 8261267 - 8261382
Alignment:
| Q |
90 |
ttattaaatggatccgtttaatacctaactctatcatttatctataactctatattactgcatttcaatatttccattcacaatatcaatatttccaagt |
189 |
Q |
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| T |
8261267 |
ttattaaatggatccgtttaatacctaactctatcatttatctatatctttatattactgcatttcaatatttccattcacaatatcaatatttccaagt |
8261366 |
T |
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| Q |
190 |
aaagctcttcttctct |
205 |
Q |
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|||||||||||||||| |
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| T |
8261367 |
aaagctcttcttctct |
8261382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 8261163 - 8261229
Alignment:
| Q |
15 |
acatatcactttctcattatctcttcaactcaaaacctataaaattttacaaatattttttaggggt |
81 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8261163 |
acatatcactttctcattatctcctcaactcaaaacctataaaattttactaatattttttaggggt |
8261229 |
T |
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