View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_low_5 (Length: 450)
Name: NF1870_low_5
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 10807572 - 10808015
Alignment:
| Q |
1 |
caatatctaaaagttctcctaattatggttatattcgaattaaagcttcaatccagaagtattttggttctacaaattaaatattttaagttccatacaa |
100 |
Q |
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| T |
10807572 |
caatatccaaaagttctcctaattatggttatattcgaattaaagcttcaatccagaagtattttggttctacaaattaaatattttaagttccatacaa |
10807671 |
T |
|
| Q |
101 |
ttcataaatccaatgttcaaccattgaaaagcatcattgtctagttaaaatccaagaaagaaacgtaacaaacttttgaactggatgaatatggttcatt |
200 |
Q |
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| T |
10807672 |
ttcataaatccaatgttcaaccattgaaaagcatcattgtctagttaaaatccaagaaagaaacgtaacaaacttttgaactggatgaatatggttcatg |
10807771 |
T |
|
| Q |
201 |
ataagccacacnnnnnnnccagttaatgcaattcagtatgatactgcacaccaaatttaaatttcaaaaacgacaaaaagttatcacaccattttgtttt |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10807772 |
ataagccacacaaaaaaaccagttaatgcaattcagtatgatactgcacaccaaatttaaatttcaaaaacgacaaaaagttatcacaccattttgtttt |
10807871 |
T |
|
| Q |
301 |
tctgcatctttgtagtaggactgagtcactgtgtgaagatgcacaaagaattcatttgtaaaatccttcctacgcttggagacaatattgctaatttcag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10807872 |
tctgcatctttgtagtaggactgagtcactgtgtgaagatgcacaaagaattcatttgtaaaatccttcctacgcttggagacaatattgctaatttcag |
10807971 |
T |
|
| Q |
401 |
atggatcctttctgattacatccagaagatcattatgtctctga |
444 |
Q |
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| T |
10807972 |
acggatcctttctgattacatccagaagatcattatgtctctga |
10808015 |
T |
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