View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1870_low_6 (Length: 430)
Name: NF1870_low_6
Description: NF1870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1870_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 25784440 - 25784847
Alignment:
| Q |
14 |
atattgtacaaaggggaaagaataaaattcatatgcaacaattcagaagataaactagaagtacatctgtaacctatttctaagttcgatcacacttttt |
113 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25784440 |
atattgcaccaaggggaaagaataaaattcatatgcaacaattcagaagataaactagaagtacatctgtaacctatttctaagttcgatcacacttttt |
25784539 |
T |
|
| Q |
114 |
aagtatgtcacactccttagggttgtgaaagcattaagttcgatgcac---aaaattacatagatcttaagacatatttgaataaaaaacttgaattaat |
210 |
Q |
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| T |
25784540 |
aagtatgtcacactccttagggttgtgaaagcattaagttcgatgcacacaaaaattacatagatcttaagacatatttgaataaaagacttgaattaat |
25784639 |
T |
|
| Q |
211 |
gaaatccaac--nnnnnnnntagatgttcatcttaaaaccctaatcaatatgtgtttagaaccacaaatcccttaagatagatttcggtgaattgaccct |
308 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
25784640 |
gaaatccaacaaaaagaaaaaagatgttcatcttaaaatcctaatcaatatgtgtttaggaccacaaatcccttaagatagatttcggtgagttgaccct |
25784739 |
T |
|
| Q |
309 |
acattgaagggtttatatccatttccaataaagtttaggcaaagtggactaggactacaacttaaagtttaaaatttcatgaacaaaaggaatttaataa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25784740 |
acattgaagggtttatatccatttccaataaagtttaggcaaagtggactaggactacaacttaaagtttaaaatttcatgaacaaaaggaatttaataa |
25784839 |
T |
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| Q |
409 |
ctaaggtg |
416 |
Q |
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|||||||| |
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| T |
25784840 |
ctaaggtg |
25784847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 13517330 - 13517140
Alignment:
| Q |
30 |
aaagaataaaattcatatgcaacaattcagaagataaactagaagtacatctgtaacctatttctaagttcgatcacactttttaagtatgtcacactcc |
129 |
Q |
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||||||||| ||||||||||||| ||| || || | ||||| ||| |||| || |||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
13517330 |
aaagaataagattcatatgcaacgatttgaaaattagattagaaatacctctgcaaactatttctaagttcatgcacactttataagtatgtcaaactcc |
13517231 |
T |
|
| Q |
130 |
ttagggttgtgaaagcattaagttcgatgcacaaaattacatagatcttaagacatatttgaataaaaaacttgaattaatgaaatccaac |
220 |
Q |
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| T |
13517230 |
ctaaggttgttaaagcactaagcccgatgcatacaaaaaaatagatcttaaaatataactgaataaaagacttgtatgaatgaaatccaac |
13517140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 28438992 - 28439059
Alignment:
| Q |
81 |
tgtaacctatttctaagttcgatcacactttttaagtatgtcacactccttagggttgtgaaagcatt |
148 |
Q |
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| T |
28438992 |
tgtaacctatttctaagttcaatcatacttcttaggtacatcacactctctagggttatgaaagcatt |
28439059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 13209469 - 13209342
Alignment:
| Q |
24 |
aaggggaaagaataaaattcatatgcaacaattcagaagataaactagaagtacatctgtaacctatttctaagttcgatcacactttttaagtatgtca |
123 |
Q |
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|||||||||| ||||| |||||||| ||| || | || |||||||||| || | |||||||||||| |||||||| ||||| || || |||| || |
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| T |
13209469 |
aaggggaaaggataaagttcatatgaaacgatagataatataaactagatatatctttgtaacctatttttaagttcggtcacatttcctaggtattcca |
13209370 |
T |
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| Q |
124 |
cactccttagggttgtgaaagcattaag |
151 |
Q |
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| T |
13209369 |
catttcctagggttgtgaaagcattaag |
13209342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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