View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18710_high_11 (Length: 232)
Name: NF18710_high_11
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18710_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 32925754 - 32925543
Alignment:
| Q |
7 |
agtgaagctgcaatttcgtacattaacttcttcaacggtctcgtaagaatttcctttaccaaggctcccaatactgtttaatacacacgttttataagat |
106 |
Q |
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| T |
32925754 |
agtgaagctgcagtttggtacattaacttcttcaaccgtctcataagaatttcctttaccaaggctcccaatactgtttaatacacacattttataagat |
32925655 |
T |
|
| Q |
107 |
ttctcaaatatattgaaatgataacaatatcatgctgcatatatataatctctattttctttttgtaaatattatctcaaggaagtatgagttatacaat |
206 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
32925654 |
ttctcaaatatattgaaataataacaatatcatactgcatatatataatctctattttctttttataaatattatctcaaggaaatatgagttatacaat |
32925555 |
T |
|
| Q |
207 |
taaatggaataa |
218 |
Q |
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|||||||||||| |
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| T |
32925554 |
taaatggaataa |
32925543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 11658226 - 11658347
Alignment:
| Q |
7 |
agtgaagctgcaatttcgtacattaacttcttcaacggtctcgtaagaatttcctttaccaaggctcccaatactgtttaatacacacgttttataagat |
106 |
Q |
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||||||||| ||||| |||||| |||||||||||| |||| ||||| | | |||||||||| ||||| ||| || || |||||||||||| |||| |
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| T |
11658226 |
agtgaagctacaattatgtacataaacttcttcaactgtctgataagactcatttataccaaggctaccaatgctgcttcattcacacgttttattagat |
11658325 |
T |
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| Q |
107 |
ttctcaaatatattgaaatgataa |
130 |
Q |
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||||||| ||||||||||||||| |
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| T |
11658326 |
ttctcaa--atattgaaatgataa |
11658347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 11658365 - 11658401
Alignment:
| Q |
193 |
atgagttatacaattaaatggaataaactacaattca |
229 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
11658365 |
atgagttataagattaaatggaataaactacaattca |
11658401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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