View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18710_high_13 (Length: 226)
Name: NF18710_high_13
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18710_high_13 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33491342 - 33491567
Alignment:
| Q |
1 |
caaaaaattgaatggttaacacaattaaaacatgtggtgttgttaatattacattaagtgaatgattatgaatataaaaagttgtcacaactcaatttat |
100 |
Q |
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| T |
33491342 |
caaaaaattgaatggttaacacaattaaaacatgtggtgttgttaatattacattaagtgaatggttatgaatataaaaagttgtcgcaactctgtttat |
33491441 |
T |
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| Q |
101 |
catccattgcacgtaattaactacaattttggcactattaaccataattgtagtttagctttannnnnnnnnnacttttggtttacttataagacaaacc |
200 |
Q |
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| T |
33491442 |
catccattgcacgtaattaactacaattttggcactattaaccataattgtagtttagctttattttttttttacttttggtttacttacaagacaaacc |
33491541 |
T |
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| Q |
201 |
tcaggttttcttccaacacttgatga |
226 |
Q |
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| T |
33491542 |
taaggttttcttccaacacttgatga |
33491567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 33412920 - 33413140
Alignment:
| Q |
2 |
aaaaaattgaatggttaacacaattaaaacatgtggtgttgttaatattacattaagtgaatgattatgaatataaaaagttgtcacaactcaatttatc |
101 |
Q |
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||||||||||||||||||||||||||||| ||||||| | |||| ||||| || ||||| | | |||||| |||||||||| | |||||| |||||| |
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| T |
33412920 |
aaaaaattgaatggttaacacaattaaaatatgtggtatggtta--attacgttcagtgatggttaatgaatctaaaaagttgccgcaactc-gtttatc |
33413016 |
T |
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| Q |
102 |
atccattgcacgtaattaactacaattttg-gcactattaaccataattgtagtttagctttannnnnnnnnnacttttggtttacttataagacaaacc |
200 |
Q |
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| T |
33413017 |
atccattgcatgcaattaactacgattttgagcactattaaccataattgtagtttagcttt--cctttttttacttttggtttagtcacaagacaaacc |
33413114 |
T |
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| Q |
201 |
tcaggttttcttccaacacttgatga |
226 |
Q |
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| |||| || |||||||||||||||| |
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| T |
33413115 |
taaggtatttttccaacacttgatga |
33413140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33420050 - 33420273
Alignment:
| Q |
1 |
caaaaaattgaatggttaacacaattaaaacatgtggtgttgttaatattacattaagtgaatgatta-tgaatataaaaagttgtcacaactcaattta |
99 |
Q |
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|||| |||||||||||||||||||||||| ||||| | | |||||| ||| || | || ||| ||| |||||||| |||| |||| ||||||| |||| |
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| T |
33420050 |
caaataattgaatggttaacacaattaaattatgtgttatggttaat--tacgtttaatggatggttaatgaatatataaaggtgtcgcaactca-ttta |
33420146 |
T |
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| Q |
100 |
tcatccattgcacgtaattaactacaattttg-gcactattaaccataattgtagtttagctttannnnnnnnnnacttttggtttacttataagacaaa |
198 |
Q |
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| T |
33420147 |
tcatcaattgcacgtaattaactacaattttgagcactattaaccataattgtaatttagc-ttaatttttttttacttttggttcactcatgagacaaa |
33420245 |
T |
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| Q |
199 |
cctcaggttttcttccaacacttgatga |
226 |
Q |
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||| |||| ||||||||||||||||||| |
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| T |
33420246 |
cctaaggtattcttccaacacttgatga |
33420273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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