View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18710_high_2 (Length: 438)
Name: NF18710_high_2
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18710_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 45 - 421
Target Start/End: Original strand, 26571694 - 26572076
Alignment:
| Q |
45 |
tatatatataattaac-agacaatcatttaaaccattgactatctatccgatattgcaactcagtcttgataatcttcatagccgagaaagctctttcaa |
143 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26571694 |
tatatatataagtaactagacaatcatttaaaccattgatcatctatccgattttgcaactcagtcttgataatcttcatagccgagaaagctctttcaa |
26571793 |
T |
|
| Q |
144 |
gtgttgtagtt-gccacatgtagtatcaaagataactttaaaagcaaatataccaacagatacacaatat----gtttccttgtctccaccatctttata |
238 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
26571794 |
ctgttgtagtttgccacatgtagtatcaaagataactttaaaagcaaatataccaacagatatacaatatatatgtttccttgtctccaccatctttata |
26571893 |
T |
|
| Q |
239 |
ttcaaatcactaatcctatctaattccaaaaatgcatcttcagagcatacatctaagaaataactttcaagctgagaatttagtgtcaatagttgaacag |
338 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26571894 |
ctcaaatcactaattccatctaattccaaaaatgcatcttcagagcatacatctaagaaataactttcaagctgagaatttagtttcaatagttgaacag |
26571993 |
T |
|
| Q |
339 |
gagaaaattctgaaagataaaattgagttaaacgaatcaacctctccttatcaaatgcagaaaagttgtctcttgggcttaaa |
421 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26571994 |
gagaaaattctaaaagataaaattgagttaaacgaatcaacctctccttatcaaatgcagaaaagttgtctcttgggcttaaa |
26572076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 99 - 421
Target Start/End: Original strand, 12585785 - 12586107
Alignment:
| Q |
99 |
gcaactcagtcttgataatcttcatagccgagaaagctctttcaagtgttgtagttgccacatgtagtatcaaagataactttaaaagcaaatataccaa |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |
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|
| T |
12585785 |
gcaactgagtcttgataatcttcatagctgagaaagctctttcagctgttgcagttgccacaggtagtatcaaagataactataaaagcaaatataccaa |
12585884 |
T |
|
| Q |
199 |
cagatacacaatatgtttccttgtctccaccatctttatattcaaatcactaatcctatctaattccaaaaatgcatcttcagagcatacatctaagaaa |
298 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||| | | |
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|
| T |
12585885 |
cggatacacaatatgtctccttgtctccaccatctttatactcaaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaata |
12585984 |
T |
|
| Q |
299 |
taactttcaagctgagaatttagtgtcaatagttgaacaggagaaaattctgaaagataaaattgagttaaacgaatcaacctctccttatcaaatgcag |
398 |
Q |
| |
|
||| ||||||| ||||||| |||| ||| |||||||||||||||||||||||| ||||||||| || |||||||||||| ||| |||||||||||||| |
|
|
| T |
12585985 |
taattttcaagttgagaatctagttccaaaagttgaacaggagaaaattctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcag |
12586084 |
T |
|
| Q |
399 |
aaaagttgtctcttgggcttaaa |
421 |
Q |
| |
|
|||| | ||||||||| ||||| |
|
|
| T |
12586085 |
aaaaactatctcttgggtttaaa |
12586107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26571228 - 26571276
Alignment:
| Q |
1 |
aagaatataagtcacttttaggcatggcatcatatcttcttggttatat |
49 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26571228 |
aagaatataagtcacttttaggcatggcttcatatcttcttggttatat |
26571276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 47 - 421
Target Start/End: Complemental strand, 22972924 - 22972550
Alignment:
| Q |
47 |
tatatataattaac-agacaatcatttaaaccattgactatctatccgatattgcaactcagtcttgataatcttcatagccgagaaagctctttcaagt |
145 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||| | | || |||| | |||||| ||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
22972924 |
tatatataagtaactagacaatcatttaa-ccattgatcacccattcgatttcgcaactgagtcttgataatcttcatagctgagaaagctctttcagct |
22972826 |
T |
|
| Q |
146 |
gttgtagttgccacatgtagtatcaaagataactttaaaagcaaatataccaacagatacacaatatgtttccttgtctccaccatctttatattcaaat |
245 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
22972825 |
gttgcagttgccacaggtagtatcaaagataactttaaaagcaaatataccaacggatacacaatatgtctccttgtctccaccatctttatactcaaat |
22972726 |
T |
|
| Q |
246 |
cactaatcctatctaattccaaaaatgcatcttcagagcatacatctaagaaataactttcaagctgagaatttagtgtcaatagttgaacaggagaaaa |
345 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||||||||||||| | |||| ||||||| ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
22972725 |
caccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagttccaaaagttgaacaggagaaaa |
22972626 |
T |
|
| Q |
346 |
ttctgaaagataaaattgagttaaacgaatcaacctctccttatcaaatgcagaaaagttgtctcttgggcttaaa |
421 |
Q |
| |
|
||||||| ||||||||| || |||||||||||| ||| ||||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
22972625 |
ttctgaaggataaaattcagctaaacgaatcaaattcttcttatcaaatgcagaaaagctatctcttgggtttaaa |
22972550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 99 - 421
Target Start/End: Complemental strand, 22964628 - 22964306
Alignment:
| Q |
99 |
gcaactcagtcttgataatcttcatagccgagaaagctctttcaagtgttgtagttgccacatgtagtatcaaagataactttaaaagcaaatataccaa |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22964628 |
gcaactgagtcttgataatcttcatagctgagaaagctctttcagctgttgcagttgccacaggtagtatcaaagataactttaaaagcaaatataccaa |
22964529 |
T |
|
| Q |
199 |
cagatacacaatatgtttccttgtctccaccatctttatattcaaatcactaatcctatctaattccaaaaatgcatcttcagagcatacatctaagaaa |
298 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||| ||||||||||||||||| | | |
|
|
| T |
22964528 |
cggatacacaatatgtctccttgtctccaccatctttatactcaaatcaccaatcccctctaattcataaaatgcattttcagagcatacatctacaata |
22964429 |
T |
|
| Q |
299 |
taactttcaagctgagaatttagtgtcaatagttgaacaggagaaaattctgaaagataaaattgagttaaacgaatcaacctctccttatcaaatgcag |
398 |
Q |
| |
|
||| ||||||| ||||||| |||| |||||||||||||||| ||||||||||| ||||||||| || |||||||||||| ||| |||||||||||||| |
|
|
| T |
22964428 |
taattttcaagttgagaatctagttccaatagttgaacaggacaaaattctgaaggataaaatttagctaaacgaatcaaattcttcttatcaaatgcag |
22964329 |
T |
|
| Q |
399 |
aaaagttgtctcttgggcttaaa |
421 |
Q |
| |
|
||||| | ||||||||| ||||| |
|
|
| T |
22964328 |
aaaagctatctcttgggtttaaa |
22964306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 99 - 421
Target Start/End: Original strand, 49600822 - 49601144
Alignment:
| Q |
99 |
gcaactcagtcttgataatcttcatagccgagaaagctctttcaagtgttgtagttgccacatgtagtatcaaagataactttaaaagcaaatataccaa |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49600822 |
gcaactgagtcttgataatcttcatagctgaaaaagctctttcagctgttgcagttgccacaagtagtatcaaagataactttaaaagcaaatataccaa |
49600921 |
T |
|
| Q |
199 |
cagatacacaatatgtttccttgtctccaccatctttatattcaaatcactaatcctatctaattccaaaaatgcatcttcagagcatacatctaagaaa |
298 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||| | | |
|
|
| T |
49600922 |
cggatacacaatatgtctccttgtctccaccatctttatactcaaatcaccaatcccctctaattcataaaatgcatcttcagagcatacatctacaata |
49601021 |
T |
|
| Q |
299 |
taactttcaagctgagaatttagtgtcaatagttgaacaggagaaaattctgaaagataaaattgagttaaacgaatcaacctctccttatcaaatgcag |
398 |
Q |
| |
|
||| ||||||| ||||||| |||| ||||||||||||||||||||| |||||| || |||||| || |||||||||||| ||| |||||||||||||| |
|
|
| T |
49601022 |
taattttcaagttgagaatctagttccaatagttgaacaggagaaaaatctgaaggagaaaattcagctaaacgaatcaaattcttcttatcaaatgcag |
49601121 |
T |
|
| Q |
399 |
aaaagttgtctcttgggcttaaa |
421 |
Q |
| |
|
||||| | |||||| || ||||| |
|
|
| T |
49601122 |
aaaagctatctcttaggtttaaa |
49601144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 47 - 317
Target Start/End: Complemental strand, 6901613 - 6901343
Alignment:
| Q |
47 |
tatatataattaac-agacaatcatttaaaccattgactatctatccgatattgcaactcagtcttgataatcttcatagccgagaaagctctttcaagt |
145 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||| ||| || |||| | ||| || ||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
6901613 |
tatatataagtaactagacaatcatttaa-ccattgatcatccattcgatttcgcagctgagtcttgataatcttcatagctgagaaagctctttcagct |
6901515 |
T |
|
| Q |
146 |
gttgtagttgccacatgtagtatcaaagataactttaaaagcaaatataccaacagatacacaatatgtttccttgtctccaccatctttatattcaaat |
245 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
6901514 |
gttgtagttgccacaggtagtatcaaagataactttaaaagcaaatataccaacggatacacaatatgtctccttgtctccaccatctttatactcaaat |
6901415 |
T |
|
| Q |
246 |
cactaatcctatctaattccaaaaatgcatcttcagagcatacatctaagaaataactttcaagctgagaat |
317 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||||||||||||| | |||| ||||||| ||||||| |
|
|
| T |
6901414 |
caccaatcccctctaattcataaaatgcatcttcagagcatacatctacaatataattttcaagttgagaat |
6901343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 152 - 421
Target Start/End: Original strand, 22318674 - 22318934
Alignment:
| Q |
152 |
gttgccacatgtagtatcaaagataactttaaaagcaaatataccaacagatacacaatatgtttccttgtctccaccatctttatattcaaatcactaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
22318674 |
gttgccacatgtagtatcaaagataactttaaaagcaaatataccaacggatacacaatatgtttccttttctccaccatctttatactcaaatcaccaa |
22318773 |
T |
|
| Q |
252 |
tcctatctaattccaaaaatgcatcttcagagcatacatctaagaaataactttcaagctgagaatttagtgtcaatagttgaacaggagaaaattctga |
351 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||| | |||| ||||||| ||||||| ||||| |||| |||||||||||||| ||| |
|
|
| T |
22318774 |
tcccctctaattcaaaaaatgcatcttcagagcatacatctacaatataattttcaagttgagaatctagtgccaat-----aacaggagaaaattttga |
22318868 |
T |
|
| Q |
352 |
aagataaaattgagttaaacgaatcaacctctccttatcaaatgcagaaaagttgtctcttgggcttaaa |
421 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||| ||| |||||||||||| | ||||||||||||||| |
|
|
| T |
22318869 |
aggataaaattgagctaaacgaatcaacttctgctt----aatgcagaaaagctatctcttgggcttaaa |
22318934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 376
Target Start/End: Complemental strand, 4923105 - 4922879
Alignment:
| Q |
151 |
agttgccacatgtagtatcaaagataactttaaaagcaaatataccaacagatacacaatatgtttccttgtctccaccatctttatattcaaatcacta |
250 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||| |||||||||||| || || ||| ||| ||| ||||||||||||||||| | |||| || | |
|
|
| T |
4923105 |
agttgtcacatgtagtatcaatgataactctaaaagtaaatataccaacgtgtatgcattatattttcttttctccaccatctttatactaaaattacca |
4923006 |
T |
|
| Q |
251 |
atcctatctaattccaaaaatgcatcttcagagcatacatctaagaaataactttcaagctgag-aatttagtgtcaatagttgaacaggagaaaattct |
349 |
Q |
| |
|
|||| ||||||| || ||| ||||||||| ||||| || |||||||||| ||| |||||| | |||| |||||||||| ||||| |||||| |||| | |
|
|
| T |
4923005 |
atcccctctaattttaataattcatcttcagggcatatatttaagaaataattttaaagctgggaaattgagtgtcaataattgaataggagacaattat |
4922906 |
T |
|
| Q |
350 |
gaaagataaaattgagttaaacgaatc |
376 |
Q |
| |
|
||| |||||| ||||| |||| ||||| |
|
|
| T |
4922905 |
gaaggataaagttgagctaaatgaatc |
4922879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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